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Items: 1 to 20 of 109

1.

Genome-wide maps of alkylation damage, repair, and mutagenesis in yeast reveal mechanisms of mutational heterogeneity.

Mao P, Brown AJ, Malc EP, Mieczkowski PA, Smerdon MJ, Roberts SA, Wyrick JJ.

Genome Res. 2017 Oct;27(10):1674-1684. doi: 10.1101/gr.225771.117. Epub 2017 Sep 14.

2.

Single-nucleotide resolution dynamic repair maps of UV damage in Saccharomyces cerevisiae genome.

Li W, Adebali O, Yang Y, Selby CP, Sancar A.

Proc Natl Acad Sci U S A. 2018 Apr 10;115(15):E3408-E3415. doi: 10.1073/pnas.1801687115. Epub 2018 Mar 26.

4.

Involvement of two endonuclease III homologs in the base excision repair pathway for the processing of DNA alkylation damage in Saccharomyces cerevisiae.

Hanna M, Chow BL, Morey NJ, Jinks-Robertson S, Doetsch PW, Xiao W.

DNA Repair (Amst). 2004 Jan 5;3(1):51-9.

PMID:
14697759
5.

APOBEC3B cytidine deaminase targets the non-transcribed strand of tRNA genes in yeast.

Saini N, Roberts SA, Sterling JF, Malc EP, Mieczkowski PA, Gordenin DA.

DNA Repair (Amst). 2017 May;53:4-14. doi: 10.1016/j.dnarep.2017.03.003. Epub 2017 Mar 21. Erratum in: DNA Repair (Amst). 2019 Jun 7;:.

7.

Genome-Wide Analysis of Nucleosome Positions, Occupancy, and Accessibility in Yeast: Nucleosome Mapping, High-Resolution Histone ChIP, and NCAM.

Rodriguez J, McKnight JN, Tsukiyama T.

Curr Protoc Mol Biol. 2014 Oct 1;108:21.28.1-16. doi: 10.1002/0471142727.mb2128s108. Review.

8.

Chromatin remodelling complex RSC promotes base excision repair in chromatin of Saccharomyces cerevisiae.

Czaja W, Mao P, Smerdon MJ.

DNA Repair (Amst). 2014 Apr;16:35-43. doi: 10.1016/j.dnarep.2014.01.002. Epub 2014 Feb 25.

9.

Chromosomal landscape of UV damage formation and repair at single-nucleotide resolution.

Mao P, Smerdon MJ, Roberts SA, Wyrick JJ.

Proc Natl Acad Sci U S A. 2016 Aug 9;113(32):9057-62. doi: 10.1073/pnas.1606667113. Epub 2016 Jul 25.

10.

A chemical approach to mapping nucleosomes at base pair resolution in yeast.

Brogaard KR, Xi L, Wang JP, Widom J.

Methods Enzymol. 2012;513:315-34. doi: 10.1016/B978-0-12-391938-0.00014-8.

11.
12.

Site-specific DNA repair at the nucleosome level in a yeast minichromosome.

Smerdon MJ, Thoma F.

Cell. 1990 May 18;61(4):675-84.

PMID:
2188732
13.

Requirement of the Saccharomyces cerevisiae APN1 gene for the repair of mitochondrial DNA alkylation damage.

Acevedo-Torres K, Fonseca-Williams S, Ayala-Torres S, Torres-Ramos CA.

Environ Mol Mutagen. 2009 May;50(4):317-27. doi: 10.1002/em.20462.

14.

A nucleosomal surface defines an integration hotspot for the Saccharomyces cerevisiae Ty1 retrotransposon.

Baller JA, Gao J, Stamenova R, Curcio MJ, Voytas DF.

Genome Res. 2012 Apr;22(4):704-13. doi: 10.1101/gr.129585.111. Epub 2012 Jan 4.

15.

Mammalian DNA beta-polymerase in base excision repair of alkylation damage.

Sobol RW, Wilson SH.

Prog Nucleic Acid Res Mol Biol. 2001;68:57-74. Review.

PMID:
11554313
16.

Genomic approaches to DNA repair and mutagenesis.

Wyrick JJ, Roberts SA.

DNA Repair (Amst). 2015 Dec;36:146-155. doi: 10.1016/j.dnarep.2015.09.018. Epub 2015 Sep 15. Review.

17.

Chromatin associated mechanisms in base excision repair - nucleosome remodeling and DNA transcription, two key players.

Menoni H, Di Mascio P, Cadet J, Dimitrov S, Angelov D.

Free Radic Biol Med. 2017 Jun;107:159-169. doi: 10.1016/j.freeradbiomed.2016.12.026. Epub 2016 Dec 20. Review.

PMID:
28011149
18.

Translational and rotational settings of H2A.Z nucleosomes across the Saccharomyces cerevisiae genome.

Albert I, Mavrich TN, Tomsho LP, Qi J, Zanton SJ, Schuster SC, Pugh BF.

Nature. 2007 Mar 29;446(7135):572-6.

PMID:
17392789
19.

DNA-repair by photolyase reveals dynamic properties of nucleosome positioning in vivo.

Suter B, Thoma F.

J Mol Biol. 2002 May 31;319(2):395-406.

PMID:
12051916
20.

Nucleosome structure and repair of N-methylpurines in the GAL1-10 genes of Saccharomyces cerevisiae.

Li S, Smerdon MJ.

J Biol Chem. 2002 Nov 22;277(47):44651-9. Epub 2002 Sep 19.

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