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Items: 1 to 20 of 113

1.

Genome-wide signatures of complex introgression and adaptive evolution in the big cats.

Figueiró HV, Li G, Trindade FJ, Assis J, Pais F, Fernandes G, Santos SHD, Hughes GM, Komissarov A, Antunes A, Trinca CS, Rodrigues MR, Linderoth T, Bi K, Silveira L, Azevedo FCC, Kantek D, Ramalho E, Brassaloti RA, Villela PMS, Nunes ALV, Teixeira RHF, Morato RG, Loska D, Saragüeta P, Gabaldón T, Teeling EC, O'Brien SJ, Nielsen R, Coutinho LL, Oliveira G, Murphy WJ, Eizirik E.

Sci Adv. 2017 Jul 19;3(7):e1700299. doi: 10.1126/sciadv.1700299. eCollection 2017 Jul.

2.

Supermatrix and species tree methods resolve phylogenetic relationships within the big cats, Panthera (Carnivora: Felidae).

Davis BW, Li G, Murphy WJ.

Mol Phylogenet Evol. 2010 Jul;56(1):64-76. doi: 10.1016/j.ympev.2010.01.036. Epub 2010 Feb 4.

PMID:
20138224
3.

Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly.

Kim S, Cho YS, Kim HM, Chung O, Kim H, Jho S, Seomun H, Kim J, Bang WY, Kim C, An J, Bae CH, Bhak Y, Jeon S, Yoon H, Kim Y, Jun J, Lee H, Cho S, Uphyrkina O, Kostyria A, Goodrich J, Miquelle D, Roelke M, Lewis J, Yurchenko A, Bankevich A, Cho J, Lee S, Edwards JS, Weber JA, Cook J, Kim S, Lee H, Manica A, Lee I, O'Brien SJ, Bhak J, Yeo JH.

Genome Biol. 2016 Oct 11;17(1):211.

4.

Evolutionary analysis of a large mtDNA translocation (numt) into the nuclear genome of the Panthera genus species.

Kim JH, Antunes A, Luo SJ, Menninger J, Nash WG, O'Brien SJ, Johnson WE.

Gene. 2006 Feb 1;366(2):292-302. Epub 2005 Dec 27.

6.

Phylogenomic evidence for ancient hybridization in the genomes of living cats (Felidae).

Li G, Davis BW, Eizirik E, Murphy WJ.

Genome Res. 2016 Jan;26(1):1-11. doi: 10.1101/gr.186668.114. Epub 2015 Oct 30.

7.

Historical biogeography of the leopard (Panthera pardus) and its extinct Eurasian populations.

Paijmans JLA, Barlow A, Förster DW, Henneberger K, Meyer M, Nickel B, Nagel D, Worsøe Havmøller R, Baryshnikov GF, Joger U, Rosendahl W, Hofreiter M.

BMC Evol Biol. 2018 Oct 23;18(1):156. doi: 10.1186/s12862-018-1268-0.

9.

A history of hybrids? Genomic patterns of introgression in the True Geese.

Ottenburghs J, Megens HJ, Kraus RHS, van Hooft P, van Wieren SE, Crooijmans RPMA, Ydenberg RC, Groenen MAM, Prins HHT.

BMC Evol Biol. 2017 Aug 22;17(1):201. doi: 10.1186/s12862-017-1048-2.

10.

The tiger genome and comparative analysis with lion and snow leopard genomes.

Cho YS, Hu L, Hou H, Lee H, Xu J, Kwon S, Oh S, Kim HM, Jho S, Kim S, Shin YA, Kim BC, Kim H, Kim CU, Luo SJ, Johnson WE, Koepfli KP, Schmidt-Küntzel A, Turner JA, Marker L, Harper C, Miller SM, Jacobs W, Bertola LD, Kim TH, Lee S, Zhou Q, Jung HJ, Xu X, Gadhvi P, Xu P, Xiong Y, Luo Y, Pan S, Gou C, Chu X, Zhang J, Liu S, He J, Chen Y, Yang L, Yang Y, He J, Liu S, Wang J, Kim CH, Kwak H, Kim JS, Hwang S, Ko J, Kim CB, Kim S, Bayarlkhagva D, Paek WK, Kim SJ, O'Brien SJ, Wang J, Bhak J.

Nat Commun. 2013;4:2433. doi: 10.1038/ncomms3433.

11.

Complete mitogenome of Asiatic lion resolves phylogenetic status within Panthera.

Bagatharia SB, Joshi MN, Pandya RV, Pandit AS, Patel RP, Desai SM, Sharma A, Panchal O, Jasmani FP, Saxena AK.

BMC Genomics. 2013 Aug 23;14:572. doi: 10.1186/1471-2164-14-572.

12.

The complete mitochondrial genome structure of the jaguar (Panthera onca).

Caragiulo A, Dougherty E, Soto S, Rabinowitz S, Amato G.

Mitochondrial DNA A DNA Mapp Seq Anal. 2016;27(2):914-5. doi: 10.3109/19401736.2014.926483. Epub 2014 Jul 10.

PMID:
25010076
13.

Genetic variability and structure of jaguar (Panthera onca) in Mexican zoos.

Rueda-Zozaya P, Mendoza-Martínez GD, Martínez-Gómez D, Monroy-Vilchis O, Godoy JA, Sunny A, Palomares F, Chávez C, Herrera-Haro J.

Genetica. 2016 Feb;144(1):59-69. doi: 10.1007/s10709-015-9878-6. Epub 2016 Jan 20.

PMID:
26790662
14.

Big cat phylogenies, consensus trees, and computational thinking.

Sul SJ, Williams TL.

J Comput Biol. 2011 Jul;18(7):895-906. doi: 10.1089/cmb.2010.0199. Epub 2011 May 12.

PMID:
21563975
15.

Diversity and evolutionary patterns of immune genes in free-ranging Namibian leopards (Panthera pardus pardus).

Castro-Prieto A, Wachter B, Melzheimer J, Thalwitzer S, Sommer S.

J Hered. 2011 Nov-Dec;102(6):653-65. doi: 10.1093/jhered/esr097. Epub 2011 Sep 13.

PMID:
21914667
16.

Genetic Diversity and Population Structure of Mesoamerican Jaguars (Panthera onca): Implications for Conservation and Management.

Wultsch C, Caragiulo A, Dias-Freedman I, Quigley H, Rabinowitz S, Amato G.

PLoS One. 2016 Oct 26;11(10):e0162377. doi: 10.1371/journal.pone.0162377. eCollection 2016.

17.

DNA microsatellite characterization of the jaguar (Panthera onca) in Colombia.

Ruiz-Garcia M, Payán E, Murillo A, Alvarez D.

Genes Genet Syst. 2006 Apr;81(2):115-27.

18.

Comparative analysis of the domestic cat genome reveals genetic signatures underlying feline biology and domestication.

Montague MJ, Li G, Gandolfi B, Khan R, Aken BL, Searle SM, Minx P, Hillier LW, Koboldt DC, Davis BW, Driscoll CA, Barr CS, Blackistone K, Quilez J, Lorente-Galdos B, Marques-Bonet T, Alkan C, Thomas GW, Hahn MW, Menotti-Raymond M, O'Brien SJ, Wilson RK, Lyons LA, Murphy WJ, Warren WC.

Proc Natl Acad Sci U S A. 2014 Dec 2;111(48):17230-5. doi: 10.1073/pnas.1410083111. Epub 2014 Nov 10.

19.

Signatures of selection in tilapia revealed by whole genome resequencing.

Xia JH, Bai Z, Meng Z, Zhang Y, Wang L, Liu F, Jing W, Wan ZY, Li J, Lin H, Yue GH.

Sci Rep. 2015 Sep 16;5:14168. doi: 10.1038/srep14168.

20.

Population Genomics Reveals Speciation and Introgression between Brown Norway Rats and Their Sibling Species.

Teng H, Zhang Y, Shi C, Mao F, Cai W, Lu L, Zhao F, Sun Z, Zhang J.

Mol Biol Evol. 2017 Sep 1;34(9):2214-2228. doi: 10.1093/molbev/msx157.

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