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Putative enhancer sites in the bovine genome are enriched with variants affecting complex traits.

Wang M, Hancock TP, MacLeod IM, Pryce JE, Cocks BG, Hayes BJ. Wang M, et al. Genet Sel Evol. 2017 Jul 6;49(1):56. doi: 10.1186/s12711-017-0331-4. Genet Sel Evol. 2017. PMID: 28683716 Free PMC article.

Targeted imputation of sequence variants and gene expression profiling identifies twelve candidate genes associated with lactation volume, composition and calving interval in dairy cattle.

Raven LA, Cocks BG, Kemper KE, Chamberlain AJ, Vander Jagt CJ, Goddard ME, Hayes BJ. Raven LA, et al. Mamm Genome. 2016 Feb;27(1-2):81-97. doi: 10.1007/s00335-015-9613-8. Epub 2015 Nov 27. Mamm Genome. 2016. PMID: 26613780

Genome-wide association study for endocrine fertility traits using single nucleotide polymorphism arrays and sequence variants in dairy cattle.

Tenghe AMM, Bouwman AC, Berglund B, Strandberg E, de Koning DJ, Veerkamp RF. Tenghe AMM, et al. J Dairy Sci. 2016 Jul;99(7):5470-5485. doi: 10.3168/jds.2015-10533. Epub 2016 May 4. J Dairy Sci. 2016. PMID: 27157577 Free article.

A multi-trait meta-analysis with imputed sequence variants reveals twelve QTL for mammary gland morphology in Fleckvieh cattle.

Pausch H, Emmerling R, Schwarzenbacher H, Fries R. Pausch H, et al. Genet Sel Evol. 2016 Feb 16;48:14. doi: 10.1186/s12711-016-0190-4. Genet Sel Evol. 2016. PMID: 26883850 Free PMC article.

Genome-wide association analysis of milk yield traits in Nordic Red Cattle using imputed whole genome sequence variants.

Iso-Touru T, Sahana G, Guldbrandtsen B, Lund MS, Vilkki J. Iso-Touru T, et al. BMC Genet. 2016 Mar 22;17:55. doi: 10.1186/s12863-016-0363-8. BMC Genet. 2016. PMID: 27006194 Free PMC article.

Weighting sequence variants based on their annotation increases the power of genome-wide association studies in dairy cattle.

Cai Z, Guldbrandtsen B, Lund MS, Sahana G. Cai Z, et al. Genet Sel Evol. 2019 May 10;51(1):20. doi: 10.1186/s12711-019-0463-9. Genet Sel Evol. 2019. PMID: 31077144 Free PMC article.

Association analysis for udder index and milking speed with imputed whole-genome sequence variants in Nordic Holstein cattle.

Jardim JG, Guldbrandtsen B, Lund MS, Sahana G. Jardim JG, et al. J Dairy Sci. 2018 Mar;101(3):2199-2212. doi: 10.3168/jds.2017-12982. Epub 2017 Dec 21. J Dairy Sci. 2018. PMID: 29274975 Free article.

Distinguishing pleiotropy from linked QTL between milk production traits and mastitis resistance in Nordic Holstein cattle.

Cai Z, Dusza M, Guldbrandtsen B, Lund MS, Sahana G. Cai Z, et al. Genet Sel Evol. 2020 Apr 7;52(1):19. doi: 10.1186/s12711-020-00538-6. Genet Sel Evol. 2020. PMID: 32264818 Free PMC article.

Putative bovine topological association domains and CTCF binding motifs can reduce the search space for causative regulatory variants of complex traits.

Wang M, Hancock TP, Chamberlain AJ, Vander Jagt CJ, Pryce JE, Cocks BG, Goddard ME, Hayes BJ. Wang M, et al. BMC Genomics. 2018 May 24;19(1):395. doi: 10.1186/s12864-018-4800-0. BMC Genomics. 2018. PMID: 29793448 Free PMC article.

Identification and expression pattern of two novel alternative splicing variants of EEF1D gene of dairy cattle.

Xie Y, Yang S, Cui X, Jiang L, Zhang S, Zhang Q, Zhang Y, Sun D. Xie Y, et al. Gene. 2014 Jan 25;534(2):189-96. doi: 10.1016/j.gene.2013.10.061. Epub 2013 Nov 14. Gene. 2014. PMID: 24239553

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