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Items: 1 to 20 of 94

1.

Crops In Silico: Generating Virtual Crops Using an Integrative and Multi-scale Modeling Platform.

Marshall-Colon A, Long SP, Allen DK, Allen G, Beard DA, Benes B, von Caemmerer S, Christensen AJ, Cox DJ, Hart JC, Hirst PM, Kannan K, Katz DS, Lynch JP, Millar AJ, Panneerselvam B, Price ND, Prusinkiewicz P, Raila D, Shekar RG, Shrivastava S, Shukla D, Srinivasan V, Stitt M, Turk MJ, Voit EO, Wang Y, Yin X, Zhu XG.

Front Plant Sci. 2017 May 15;8:786. doi: 10.3389/fpls.2017.00786. eCollection 2017.

2.

Plants in silico: why, why now and what?--an integrative platform for plant systems biology research.

Zhu XG, Lynch JP, LeBauer DS, Millar AJ, Stitt M, Long SP.

Plant Cell Environ. 2016 May;39(5):1049-57. doi: 10.1111/pce.12673. Epub 2015 Dec 21. Review.

PMID:
26523481
3.

Green systems biology - From single genomes, proteomes and metabolomes to ecosystems research and biotechnology.

Weckwerth W.

J Proteomics. 2011 Dec 10;75(1):284-305. doi: 10.1016/j.jprot.2011.07.010. Epub 2011 Jul 23. Review.

4.

Use of computational modeling combined with advanced visualization to develop strategies for the design of crop ideotypes to address food security.

Christensen AJ, Srinivasan V, Hart JC, Marshall-Colon A.

Nutr Rev. 2018 May 1;76(5):332-347. doi: 10.1093/nutrit/nux076.

5.

Modeling Rice Metabolism: From Elucidating Environmental Effects on Cellular Phenotype to Guiding Crop Improvement.

Lakshmanan M, Cheung CY, Mohanty B, Lee DY.

Front Plant Sci. 2016 Nov 29;7:1795. eCollection 2016. Review.

6.

Integrating pests and pathogens into the climate change/food security debate.

Gregory PJ, Johnson SN, Newton AC, Ingram JS.

J Exp Bot. 2009;60(10):2827-38. doi: 10.1093/jxb/erp080. Epub 2009 Apr 20. Review.

PMID:
19380424
7.

How can we make plants grow faster? A source-sink perspective on growth rate.

White AC, Rogers A, Rees M, Osborne CP.

J Exp Bot. 2016 Jan;67(1):31-45. doi: 10.1093/jxb/erv447. Epub 2015 Oct 14. Review.

PMID:
26466662
8.

Plant Phenomics, From Sensors to Knowledge.

Tardieu F, Cabrera-Bosquet L, Pridmore T, Bennett M.

Curr Biol. 2017 Aug 7;27(15):R770-R783. doi: 10.1016/j.cub.2017.05.055. Review.

9.

Improving crop disease resistance: lessons from research on Arabidopsis and tomato.

Piquerez SJ, Harvey SE, Beynon JL, Ntoukakis V.

Front Plant Sci. 2014 Dec 3;5:671. doi: 10.3389/fpls.2014.00671. eCollection 2014. Review.

10.

The next green movement: Plant biology for the environment and sustainability.

Jez JM, Lee SG, Sherp AM.

Science. 2016 Sep 16;353(6305):1241-4. doi: 10.1126/science.aag1698. Review.

PMID:
27634525
11.

Multiscale metabolic modeling: dynamic flux balance analysis on a whole-plant scale.

Grafahrend-Belau E, Junker A, Eschenröder A, Müller J, Schreiber F, Junker BH.

Plant Physiol. 2013 Oct;163(2):637-47. doi: 10.1104/pp.113.224006. Epub 2013 Aug 7.

12.

Crop responses to climatic variation.

Porter JR, Semenov MA.

Philos Trans R Soc Lond B Biol Sci. 2005 Nov 29;360(1463):2021-35. Review.

13.

A computational systems biology software platform for multiscale modeling and simulation: integrating whole-body physiology, disease biology, and molecular reaction networks.

Eissing T, Kuepfer L, Becker C, Block M, Coboeken K, Gaub T, Goerlitz L, Jaeger J, Loosen R, Ludewig B, Meyer M, Niederalt C, Sevestre M, Siegmund HU, Solodenko J, Thelen K, Telle U, Weiss W, Wendl T, Willmann S, Lippert J.

Front Physiol. 2011 Feb 24;2:4. doi: 10.3389/fphys.2011.00004. eCollection 2011.

14.

Putting mechanisms into crop production models.

Boote KJ, Jones JW, White JW, Asseng S, Lizaso JI.

Plant Cell Environ. 2013 Sep;36(9):1658-72. doi: 10.1111/pce.12119. Epub 2013 May 22.

15.

Advancing cancer systems biology: introducing the Center for the Development of a Virtual Tumor, CViT.

Deisboeck TS, Zhang L, Martin S.

Cancer Inform. 2007;5:1-8. Epub 2007 Mar 30.

16.

Plant exomics: concepts, applications and methodologies in crop improvement.

Hashmi U, Shafqat S, Khan F, Majid M, Hussain H, Kazi AG, John R, Ahmad P.

Plant Signal Behav. 2015;10(1):e976152. doi: 10.4161/15592324.2014.976152. Review.

17.

Crop improvement using life cycle datasets acquired under field conditions.

Mochida K, Saisho D, Hirayama T.

Front Plant Sci. 2015 Sep 22;6:740. doi: 10.3389/fpls.2015.00740. eCollection 2015. Review.

18.

European plant science: a field of opportunities.

European Plant Science Organization.

J Exp Bot. 2005 Jul;56(417):1699-709. Epub 2005 Jun 6. Review.

PMID:
15939733
19.

Assessment and statistical modeling of the relationship between remotely sensed aerosol optical depth and PM2.5 in the eastern United States.

Paciorek CJ, Liu Y; HEI Health Review Committee.

Res Rep Health Eff Inst. 2012 May;(167):5-83; discussion 85-91.

PMID:
22838153
20.

Systems biology-based approaches toward understanding drought tolerance in food crops.

Jogaiah S, Govind SR, Tran LS.

Crit Rev Biotechnol. 2013 Mar;33(1):23-39. doi: 10.3109/07388551.2012.659174. Epub 2012 Feb 25. Review.

PMID:
22364373

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