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Items: 1 to 20 of 86

1.

Resource Competition Shapes the Response of Genetic Circuits.

Qian Y, Huang HH, Jiménez JI, Del Vecchio D.

ACS Synth Biol. 2017 Jul 21;6(7):1263-1272. doi: 10.1021/acssynbio.6b00361. Epub 2017 Apr 3.

PMID:
28350160
2.

Dynamic allocation of orthogonal ribosomes facilitates uncoupling of co-expressed genes.

Darlington APS, Kim J, Jiménez JI, Bates DG.

Nat Commun. 2018 Feb 15;9(1):695. doi: 10.1038/s41467-018-02898-6.

3.

Decoupling Resource-Coupled Gene Expression in Living Cells.

Shopera T, He L, Oyetunde T, Tang YJ, Moon TS.

ACS Synth Biol. 2017 Aug 18;6(8):1596-1604. doi: 10.1021/acssynbio.7b00119. Epub 2017 May 4.

PMID:
28459541
4.

Synthetic tunable amplifying buffer circuit in E. coli.

Nilgiriwala KS, Jiménez J, Rivera PM, Del Vecchio D.

ACS Synth Biol. 2015 May 15;4(5):577-84. doi: 10.1021/sb5002533. Epub 2014 Oct 21.

PMID:
25279430
5.

Isocost Lines Describe the Cellular Economy of Genetic Circuits.

Gyorgy A, Jiménez JI, Yazbek J, Huang HH, Chung H, Weiss R, Del Vecchio D.

Biophys J. 2015 Aug 4;109(3):639-46. doi: 10.1016/j.bpj.2015.06.034.

6.

Ribozyme-based insulator parts buffer synthetic circuits from genetic context.

Lou C, Stanton B, Chen YJ, Munsky B, Voigt CA.

Nat Biotechnol. 2012 Nov;30(11):1137-42. doi: 10.1038/nbt.2401. Epub 2012 Oct 3.

7.

Constraint and contingency in multifunctional gene regulatory circuits.

Payne JL, Wagner A.

PLoS Comput Biol. 2013;9(6):e1003071. doi: 10.1371/journal.pcbi.1003071. Epub 2013 Jun 6.

8.

A spectrum of modularity in multi-functional gene circuits.

Jiménez A, Cotterell J, Munteanu A, Sharpe J.

Mol Syst Biol. 2017 Apr 27;13(4):925. doi: 10.15252/msb.20167347.

9.

Insulating gene circuits from context by RNA processing.

Bashor CJ, Collins JJ.

Nat Biotechnol. 2012 Nov;30(11):1061-2. doi: 10.1038/nbt.2411. No abstract available.

PMID:
23138300
10.

The role of configuration and coupling in autoregulatory gene circuits.

Wu K, Rao CV.

Mol Microbiol. 2010 Jan;75(2):513-27. doi: 10.1111/j.1365-2958.2009.07011.x. Epub 2009 Dec 16.

11.

Antisense transcription as a tool to tune gene expression.

Brophy JA, Voigt CA.

Mol Syst Biol. 2016 Jan 14;12(1):854. doi: 10.15252/msb.20156540.

12.

Fine-tuning gene networks using simple sequence repeats.

Egbert RG, Klavins E.

Proc Natl Acad Sci U S A. 2012 Oct 16;109(42):16817-22. doi: 10.1073/pnas.1205693109. Epub 2012 Aug 27.

13.

Retroactivity controls the temporal dynamics of gene transcription.

Jayanthi S, Nilgiriwala KS, Del Vecchio D.

ACS Synth Biol. 2013 Aug 16;2(8):431-41. doi: 10.1021/sb300098w. Epub 2013 Mar 7.

PMID:
23654274
14.

Structure-function relations are subtle in genetic regulatory networks.

Wall ME.

Math Biosci. 2011 May;231(1):61-8. doi: 10.1016/j.mbs.2011.02.003. Epub 2011 Feb 15. Review.

PMID:
21329703
15.

In silico feedback for in vivo regulation of a gene expression circuit.

Milias-Argeitis A, Summers S, Stewart-Ornstein J, Zuleta I, Pincus D, El-Samad H, Khammash M, Lygeros J.

Nat Biotechnol. 2011 Nov 6;29(12):1114-6. doi: 10.1038/nbt.2018.

16.

Systematic approach to Escherichia coli cell population control using a genetic lysis circuit.

Hsu CY, Yu TC, Lin LJ, Hu RH, Chen BS.

BMC Syst Biol. 2014;8 Suppl 5:S7. doi: 10.1186/1752-0509-8-S5-S7. Epub 2014 Dec 12.

17.

Automatic design of digital synthetic gene circuits.

Marchisio MA, Stelling J.

PLoS Comput Biol. 2011 Feb;7(2):e1001083. doi: 10.1371/journal.pcbi.1001083. Epub 2011 Feb 17.

18.

A Novel Synthesizing Genetic Logic Circuit: Frequency Multiplier.

Chuang CH, Lin CL.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jul-Aug;11(4):702-13. doi: 10.1109/TCBB.2014.2316814.

PMID:
26356341
19.

Use of fluorescence microscopy to analyze genetic circuit dynamics.

Süel G.

Methods Enzymol. 2011;497:275-93. doi: 10.1016/B978-0-12-385075-1.00013-5.

PMID:
21601092
20.

Latent phenotypes pervade gene regulatory circuits.

Payne JL, Wagner A.

BMC Syst Biol. 2014 May 30;8:64. doi: 10.1186/1752-0509-8-64.

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