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Items: 1 to 20 of 133


Potential for hydrogen-oxidizing chemolithoautotrophic and diazotrophic populations to initiate biofilm formation in oligotrophic, deep terrestrial subsurface waters.

Wu X, Pedersen K, Edlund J, Eriksson L, Åström M, Andersson AF, Bertilsson S, Dopson M.

Microbiome. 2017 Mar 23;5(1):37. doi: 10.1186/s40168-017-0253-y.


Metatranscriptomes Reveal That All Three Domains of Life Are Active but Are Dominated by Bacteria in the Fennoscandian Crystalline Granitic Continental Deep Biosphere.

Lopez-Fernandez M, Simone D, Wu X, Soler L, Nilsson E, Holmfeldt K, Lantz H, Bertilsson S, Dopson M.

MBio. 2018 Nov 20;9(6). pii: e01792-18. doi: 10.1128/mBio.01792-18.


Investigation of viable taxa in the deep terrestrial biosphere suggests high rates of nutrient recycling.

Lopez-Fernandez M, Broman E, Turner S, Wu X, Bertilsson S, Dopson M.

FEMS Microbiol Ecol. 2018 Aug 1;94(8). doi: 10.1093/femsec/fiy121.


Depth and Dissolved Organic Carbon Shape Microbial Communities in Surface Influenced but Not Ancient Saline Terrestrial Aquifers.

Lopez-Fernandez M, Åström M, Bertilsson S, Dopson M.

Front Microbiol. 2018 Nov 27;9:2880. doi: 10.3389/fmicb.2018.02880. eCollection 2018.


Active sulfur cycling by diverse mesophilic and thermophilic microorganisms in terrestrial mud volcanoes of Azerbaijan.

Green-Saxena A, Feyzullayev A, Hubert CR, Kallmeyer J, Krueger M, Sauer P, Schulz HM, Orphan VJ.

Environ Microbiol. 2012 Dec;14(12):3271-86. doi: 10.1111/1462-2920.12015. Epub 2012 Nov 1.


Microbial community structure and functioning in marine sediments associated with diffuse hydrothermal venting assessed by integrated meta-omics.

Urich T, Lanzén A, Stokke R, Pedersen RB, Bayer C, Thorseth IH, Schleper C, Steen IH, Ovreas L.

Environ Microbiol. 2014 Sep;16(9):2699-710. doi: 10.1111/1462-2920.12283. Epub 2013 Oct 27.


Metatranscriptomic evidence of pervasive and diverse chemolithoautotrophy relevant to C, S, N and Fe cycling in a shallow alluvial aquifer.

Jewell TN, Karaoz U, Brodie EL, Williams KH, Beller HR.

ISME J. 2016 Sep;10(9):2106-17. doi: 10.1038/ismej.2016.25. Epub 2016 Mar 4.


Microbial metagenomes from three aquifers in the Fennoscandian shield terrestrial deep biosphere reveal metabolic partitioning among populations.

Wu X, Holmfeldt K, Hubalek V, Lundin D, Åström M, Bertilsson S, Dopson M.

ISME J. 2016 May;10(5):1192-203. doi: 10.1038/ismej.2015.185. Epub 2015 Oct 20.


Synchronized dynamics of bacterial niche-specific functions during biofilm development in a cold seep brine pool.

Zhang W, Wang Y, Bougouffa S, Tian R, Cao H, Li Y, Cai L, Wong YH, Zhang G, Zhou G, Zhang X, Bajic VB, Al-Suwailem A, Qian PY.

Environ Microbiol. 2015 Oct;17(10):4089-104. doi: 10.1111/1462-2920.12978. Epub 2015 Aug 17.


Statistical Analysis of Community RNA Transcripts between Organic Carbon and Geogas-Fed Continental Deep Biosphere Groundwaters.

Lopez-Fernandez M, Broman E, Simone D, Bertilsson S, Dopson M.

MBio. 2019 Aug 13;10(4). pii: e01470-19. doi: 10.1128/mBio.01470-19.


Strain-level genomic variation in natural populations of Lebetimonas from an erupting deep-sea volcano.

Meyer JL, Huber JA.

ISME J. 2014 Apr;8(4):867-80. doi: 10.1038/ismej.2013.206. Epub 2013 Nov 21.


Connectivity to the surface determines diversity patterns in subsurface aquifers of the Fennoscandian shield.

Hubalek V, Wu X, Eiler A, Buck M, Heim C, Dopson M, Bertilsson S, Ionescu D.

ISME J. 2016 Oct;10(10):2447-58. doi: 10.1038/ismej.2016.36. Epub 2016 Mar 29. Erratum in: ISME J. 2016 Oct;10(10):2556.


Niche differentiation among sulfur-oxidizing bacterial populations in cave waters.

Macalady JL, Dattagupta S, Schaperdoth I, Jones DS, Druschel GK, Eastman D.

ISME J. 2008 Jun;2(6):590-601. doi: 10.1038/ismej.2008.25. Epub 2008 Mar 20.


Functional microbial diversity explains groundwater chemistry in a pristine aquifer.

Flynn TM, Sanford RA, Ryu H, Bethke CM, Levine AD, Ashbolt NJ, Santo Domingo JW.

BMC Microbiol. 2013 Jun 24;13:146. doi: 10.1186/1471-2180-13-146.


Massive dominance of Epsilonproteobacteria in formation waters from a Canadian oil sands reservoir containing severely biodegraded oil.

Hubert CR, Oldenburg TB, Fustic M, Gray ND, Larter SR, Penn K, Rowan AK, Seshadri R, Sherry A, Swainsbury R, Voordouw G, Voordouw JK, Head IM.

Environ Microbiol. 2012 Feb;14(2):387-404. doi: 10.1111/j.1462-2920.2011.02521.x. Epub 2011 Aug 8.


Metabolic flexibility of enigmatic SAR324 revealed through metagenomics and metatranscriptomics.

Sheik CS, Jain S, Dick GJ.

Environ Microbiol. 2014 Jan;16(1):304-17. doi: 10.1111/1462-2920.12165. Epub 2013 Jun 30.


Chemolithoautotrophic denitrification of epsilonproteobacteria in marine pelagic redox gradients.

Bruckner CG, Mammitzsch K, Jost G, Wendt J, Labrenz M, Jürgens K.

Environ Microbiol. 2013 May;15(5):1505-13. doi: 10.1111/j.1462-2920.2012.02880.x. Epub 2012 Sep 26.


Environmental switching during biofilm development in a cold seep system and functional determinants of species sorting.

Zhang W, Tian R, Bo Y, Cao H, Cai L, Chen L, Zhou G, Sun J, Zhang X, Al-Suwailem A, Qian PY.

Mol Ecol. 2016 May;25(9):1958-71. doi: 10.1111/mec.13501. Epub 2016 Jan 19.


Diversity of active chemolithoautotrophic prokaryotes in the sulfidic zone of a Black Sea pelagic redoxcline as determined by rRNA-based stable isotope probing.

Glaubitz S, Labrenz M, Jost G, Jürgens K.

FEMS Microbiol Ecol. 2010 Oct;74(1):32-41. doi: 10.1111/j.1574-6941.2010.00944.x. Epub 2010 Jul 22.


Dominant microbial populations in limestone-corroding stream biofilms, Frasassi cave system, Italy.

Macalady JL, Lyon EH, Koffman B, Albertson LK, Meyer K, Galdenzi S, Mariani S.

Appl Environ Microbiol. 2006 Aug;72(8):5596-609.

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