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Items: 1 to 20 of 115

1.

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease.

Joensen KG, Engsbro ALØ, Lukjancenko O, Kaas RS, Lund O, Westh H, Aarestrup FM.

Eur J Clin Microbiol Infect Dis. 2017 Jul;36(7):1325-1338. doi: 10.1007/s10096-017-2947-2. Epub 2017 Mar 11. Erratum in: Eur J Clin Microbiol Infect Dis. 2017 May 9;:.

2.

Systematic application of multiplex PCR enhances the detection of bacteria, parasites, and viruses in stool samples.

McAuliffe GN, Anderson TP, Stevens M, Adams J, Coleman R, Mahagamasekera P, Young S, Henderson T, Hofmann M, Jennings LC, Murdoch DR.

J Infect. 2013 Aug;67(2):122-9. doi: 10.1016/j.jinf.2013.04.009. Epub 2013 Apr 18.

PMID:
23603249
3.

Metagenomic Approach for Identification of the Pathogens Associated with Diarrhea in Stool Specimens.

Zhou Y, Wylie KM, El Feghaly RE, Mihindukulasuriya KA, Elward A, Haslam DB, Storch GA, Weinstock GM.

J Clin Microbiol. 2016 Feb;54(2):368-75. doi: 10.1128/JCM.01965-15. Epub 2015 Dec 4.

4.

Combined stool-based multiplex PCR and microscopy for enhanced pathogen detection in patients with persistent diarrhoea and asymptomatic controls from Côte d'Ivoire.

Becker SL, Chatigre JK, Gohou JP, Coulibaly JT, Leuppi R, Polman K, Chappuis F, Mertens P, Herrmann M, N'Goran EK, Utzinger J, von Müller L.

Clin Microbiol Infect. 2015 Jun;21(6):591.e1-10. doi: 10.1016/j.cmi.2015.02.016. Epub 2015 Mar 3.

5.

Application of next generation sequencing for the detection of human viral pathogens in clinical specimens.

Parker J, Chen J.

J Clin Virol. 2017 Jan;86:20-26. doi: 10.1016/j.jcv.2016.11.010. Epub 2016 Nov 22.

6.

A quantitative polymerase chain reaction assay for rapid detection of 9 pathogens directly from stools of travelers with diarrhea.

Antikainen J, Kantele A, Pakkanen SH, Lääveri T, Riutta J, Vaara M, Kirveskari J.

Clin Gastroenterol Hepatol. 2013 Oct;11(10):1300-1307.e3. doi: 10.1016/j.cgh.2013.03.037. Epub 2013 Apr 29.

PMID:
23639597
7.

Development and assessment of molecular diagnostic tests for 15 enteropathogens causing childhood diarrhoea: a multicentre study.

Liu J, Kabir F, Manneh J, Lertsethtakarn P, Begum S, Gratz J, Becker SM, Operario DJ, Taniuchi M, Janaki L, Platts-Mills JA, Haverstick DM, Kabir M, Sobuz SU, Nakjarung K, Sakpaisal P, Silapong S, Bodhidatta L, Qureshi S, Kalam A, Saidi Q, Swai N, Mujaga B, Maro A, Kwambana B, Dione M, Antonio M, Kibiki G, Mason CJ, Haque R, Iqbal N, Zaidi AKM, Houpt ER.

Lancet Infect Dis. 2014 Aug;14(8):716-724. doi: 10.1016/S1473-3099(14)70808-4. Epub 2014 Jul 9.

PMID:
25022434
8.

Identification of potential pathogenic viruses in patients with acute myocarditis using next-generation sequencing.

Takeuchi S, Kawada JI, Okuno Y, Horiba K, Suzuki T, Torii Y, Yasuda K, Numaguchi A, Kato T, Takahashi Y, Ito Y.

J Med Virol. 2018 Dec;90(12):1814-1821. doi: 10.1002/jmv.25263. Epub 2018 Aug 13.

PMID:
30011073
9.

Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection.

Lindsay B, Pop M, Antonio M, Walker AW, Mai V, Ahmed D, Oundo J, Tamboura B, Panchalingam S, Levine MM, Kotloff K, Li S, Magder LS, Paulson JN, Liu B, Ikumapayi U, Ebruke C, Dione M, Adeyemi M, Rance R, Stares MD, Ukhanova M, Barnes B, Lewis I, Ahmed F, Alam MT, Amin R, Siddiqui S, Ochieng JB, Ouma E, Juma J, Mailu E, Omore R, O'Reilly CE, Hannis J, Manalili S, Deleon J, Yasuda I, Blyn L, Ranken R, Li F, Housley R, Ecker DJ, Hossain MA, Breiman RF, Morris JG, McDaniel TK, Parkhill J, Saha D, Sampath R, Stine OC, Nataro JP.

J Clin Microbiol. 2013 Oct;51(10):3263-9. doi: 10.1128/JCM.01342-13. Epub 2013 Jul 24.

10.

Can rapid integrated polymerase chain reaction-based diagnostics for gastrointestinal pathogens improve routine hospital infection control practice? A diagnostic study.

Pankhurst L, Macfarlane-Smith L, Buchanan J, Anson L, Davies K, O'Connor L, Ashwin H, Pike G, Dingle KE, Peto TE, Wordsworth S, Walker AS, Wilcox MH, Crook DW.

Health Technol Assess. 2014 Aug;18(53):1-167. doi: 10.3310/hta18530.

11.

Towards clinical molecular diagnosis of inherited cardiac conditions: a comparison of bench-top genome DNA sequencers.

Li X, Buckton AJ, Wilkinson SL, John S, Walsh R, Novotny T, Valaskova I, Gupta M, Game L, Barton PJ, Cook SA, Ware JS.

PLoS One. 2013 Jul 4;8(7):e67744. doi: 10.1371/journal.pone.0067744. Print 2013.

12.

A comparison of Luminex xTAG® Gastrointestinal Pathogen Panel (xTAG GPP) and routine tests for the detection of enteropathogens circulating in Southern China.

Deng J, Luo X, Wang R, Jiang L, Ding X, Hao W, Peng Y, Jiang C, Yu N, Che X.

Diagn Microbiol Infect Dis. 2015 Nov;83(3):325-30. doi: 10.1016/j.diagmicrobio.2015.07.024. Epub 2015 Jul 30.

PMID:
26318973
13.

Targeted Enrichment for Pathogen Detection and Characterization in Three Felid Species.

Lee JS, Mackie RS, Harrison T, Shariat B, Kind T, Kehl T, Löchelt M, Boucher C, VandeWoude S.

J Clin Microbiol. 2017 Jun;55(6):1658-1670. doi: 10.1128/JCM.01463-16. Epub 2017 Mar 22.

14.

Improved detection of five major gastrointestinal pathogens by use of a molecular screening approach.

de Boer RF, Ott A, Kesztyüs B, Kooistra-Smid AM.

J Clin Microbiol. 2010 Nov;48(11):4140-6. doi: 10.1128/JCM.01124-10. Epub 2010 Sep 22.

15.

Evaluation of an amplicon-based next-generation sequencing panel for detection of BRCA1 and BRCA2 genetic variants.

Shin S, Hwang IS, Lee ST, Choi JR.

Breast Cancer Res Treat. 2016 Aug;158(3):433-40. doi: 10.1007/s10549-016-3891-z. Epub 2016 Jul 6.

PMID:
27383479
16.

Molecular diagnostics for hereditary hearing loss in children.

Sommen M, Wuyts W, Van Camp G.

Expert Rev Mol Diagn. 2017 Aug;17(8):751-760. doi: 10.1080/14737159.2017.1340834. Epub 2017 Jun 19. Review.

PMID:
28593790
17.

Exploring the potential of next-generation sequencing in detection of respiratory viruses.

Prachayangprecha S, Schapendonk CM, Koopmans MP, Osterhaus AD, Schürch AC, Pas SD, van der Eijk AA, Poovorawan Y, Haagmans BL, Smits SL.

J Clin Microbiol. 2014 Oct;52(10):3722-30. doi: 10.1128/JCM.01641-14. Epub 2014 Aug 6.

18.
19.

Next-generation sequencing diagnostics of bacteremia in sepsis (Next GeneSiS-Trial): Study protocol of a prospective, observational, noninterventional, multicenter, clinical trial.

Brenner T, Decker SO, Grumaz S, Stevens P, Bruckner T, Schmoch T, Pletz MW, Bracht H, Hofer S, Marx G, Weigand MA, Sohn K; TIFOnet Critical Care Trials Group.

Medicine (Baltimore). 2018 Feb;97(6):e9868. doi: 10.1097/MD.0000000000009868.

20.

Detection of bacterial DNA from central venous catheter removed from patients by next generation sequencing: a preliminary clinical study.

Okuda KI, Yoshii Y, Yamada S, Chiba A, Hironaka I, Hori S, Yanaga K, Mizunoe Y.

Ann Clin Microbiol Antimicrob. 2018 Dec 22;17(1):44. doi: 10.1186/s12941-018-0297-2.

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