Similar articles for PMID: 28138849

Year	Number of Results
1997	1
2010	3
2011	3
2012	2
2013	5
2014	7
2015	10
2016	17
2017	15
2018	2
2019	6
2020	3
2021	6
2022	10
2023	8
2024	0

1

Contiguity-Preserving Transposition Sequencing (CPT-Seq) for Genome-Wide Haplotyping, Assembly, and Single-Cell ATAC-Seq.

Christiansen L, Amini S, Zhang F, Ronaghi M, Gunderson KL, Steemers FJ. Christiansen L, et al. Methods Mol Biol. 2017;1551:207-221. doi: 10.1007/978-1-4939-6750-6_12. Methods Mol Biol. 2017. PMID: 28138849

2

Haplotype-resolved whole-genome sequencing by contiguity-preserving transposition and combinatorial indexing.

Amini S, Pushkarev D, Christiansen L, Kostem E, Royce T, Turk C, Pignatelli N, Adey A, Kitzman JO, Vijayan K, Ronaghi M, Shendure J, Gunderson KL, Steemers FJ. Amini S, et al. Nat Genet. 2014 Dec;46(12):1343-9. doi: 10.1038/ng.3119. Epub 2014 Oct 19. Nat Genet. 2014. PMID: 25326703 Free PMC article.

3

Haplotype phasing of whole human genomes using bead-based barcode partitioning in a single tube.

Zhang F, Christiansen L, Thomas J, Pokholok D, Jackson R, Morrell N, Zhao Y, Wiley M, Welch E, Jaeger E, Granat A, Norberg SJ, Halpern A, C Rogert M, Ronaghi M, Shendure J, Gormley N, Gunderson KL, Steemers FJ. Zhang F, et al. Nat Biotechnol. 2017 Sep;35(9):852-857. doi: 10.1038/nbt.3897. Epub 2017 Jun 26. Nat Biotechnol. 2017. PMID: 28650462

4

A Fosmid Pool-Based Next Generation Sequencing Approach to Haplotype-Resolve Whole Genomes.

Suk EK, Schulz S, Mentrup B, Huebsch T, Duitama J, Hoehe MR. Suk EK, et al. Methods Mol Biol. 2017;1551:223-269. doi: 10.1007/978-1-4939-6750-6_13. Methods Mol Biol. 2017. PMID: 28138850

5

Dense and accurate whole-chromosome haplotyping of individual genomes.

Porubsky D, Garg S, Sanders AD, Korbel JO, Guryev V, Lansdorp PM, Marschall T. Porubsky D, et al. Nat Commun. 2017 Nov 3;8(1):1293. doi: 10.1038/s41467-017-01389-4. Nat Commun. 2017. PMID: 29101320 Free PMC article.

6

De novo assembly and phasing of a Korean human genome.

Seo JS, Rhie A, Kim J, Lee S, Sohn MH, Kim CU, Hastie A, Cao H, Yun JY, Kim J, Kuk J, Park GH, Kim J, Ryu H, Kim J, Roh M, Baek J, Hunkapiller MW, Korlach J, Shin JY, Kim C. Seo JS, et al. Nature. 2016 Oct 13;538(7624):243-247. doi: 10.1038/nature20098. Epub 2016 Oct 5. Nature. 2016. PMID: 27706134

7

In vitro, long-range sequence information for de novo genome assembly via transposase contiguity.

Adey A, Kitzman JO, Burton JN, Daza R, Kumar A, Christiansen L, Ronaghi M, Amini S, Gunderson KL, Steemers FJ, Shendure J. Adey A, et al. Genome Res. 2014 Dec;24(12):2041-9. doi: 10.1101/gr.178319.114. Epub 2014 Oct 19. Genome Res. 2014. PMID: 25327137 Free PMC article.

8

Efficient and unique cobarcoding of second-generation sequencing reads from long DNA molecules enabling cost-effective and accurate sequencing, haplotyping, and de novo assembly.

Wang O, Chin R, Cheng X, Wu MKY, Mao Q, Tang J, Sun Y, Anderson E, Lam HK, Chen D, Zhou Y, Wang L, Fan F, Zou Y, Xie Y, Zhang RY, Drmanac S, Nguyen D, Xu C, Villarosa C, Gablenz S, Barua N, Nguyen S, Tian W, Liu JS, Wang J, Liu X, Qi X, Chen A, Wang H, Dong Y, Zhang W, Alexeev A, Yang H, Wang J, Kristiansen K, Xu X, Drmanac R, Peters BA. Wang O, et al. Genome Res. 2019 May;29(5):798-808. doi: 10.1101/gr.245126.118. Epub 2019 Apr 2. Genome Res. 2019. PMID: 30940689 Free PMC article.

9

Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes.

Bansal V. Bansal V. Bioinformatics. 2019 Jul 15;35(14):i242-i248. doi: 10.1093/bioinformatics/btz329. Bioinformatics. 2019. PMID: 31510646 Free PMC article.

10

Low-Cost Genome-Scale Phasing with Barcode-Linked Sequencing.

Redin D. Redin D. Methods Mol Biol. 2023;2590:85-99. doi: 10.1007/978-1-0716-2819-5_6. Methods Mol Biol. 2023. PMID: 36335494

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