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Items: 1 to 20 of 96

1.

Nucleosome-free DNA regions differentially affect distant communication in chromatin.

Nizovtseva EV, Clauvelin N, Todolli S, Polikanov YS, Kulaeva OI, Wengrzynek S, Olson WK, Studitsky VM.

Nucleic Acids Res. 2017 Apr 7;45(6):3059-3067. doi: 10.1093/nar/gkw1240.

2.

Nucleosome spacing periodically modulates nucleosome chain folding and DNA topology in circular nucleosome arrays.

Bass MV, Nikitina T, Norouzi D, Zhurkin VB, Grigoryev SA.

J Biol Chem. 2019 Mar 15;294(11):4233-4246. doi: 10.1074/jbc.RA118.006412. Epub 2019 Jan 10.

PMID:
30630950
3.

Nucleosome positioning in relation to nucleosome spacing and DNA sequence-specific binding of a protein.

Pusarla RH, Vinayachandran V, Bhargava P.

FEBS J. 2007 May;274(9):2396-410. Epub 2007 Apr 5.

4.

Chromatin structure can strongly facilitate enhancer action over a distance.

Rubtsov MA, Polikanov YS, Bondarenko VA, Wang YH, Studitsky VM.

Proc Natl Acad Sci U S A. 2006 Nov 21;103(47):17690-5. Epub 2006 Nov 13.

5.

Changing chromatin fiber conformation by nucleosome repositioning.

Müller O, Kepper N, Schöpflin R, Ettig R, Rippe K, Wedemann G.

Biophys J. 2014 Nov 4;107(9):2141-50. doi: 10.1016/j.bpj.2014.09.026.

6.

Nucleosome distribution and linker DNA: connecting nuclear function to dynamic chromatin structure.

Szerlong HJ, Hansen JC.

Biochem Cell Biol. 2011 Feb;89(1):24-34. doi: 10.1139/O10-139. Review.

7.

Nucleosome positioning and composition modulate in silico chromatin flexibility.

Clauvelin N, Lo P, Kulaeva OI, Nizovtseva EV, Diaz-Montes J, Zola J, Parashar M, Studitsky VM, Olson WK.

J Phys Condens Matter. 2015 Feb 18;27(6):064112. doi: 10.1088/0953-8984/27/6/064112. Epub 2015 Jan 7.

8.

Analysis of distant communication on defined chromatin templates in vitro.

Polikanov YS, Studitsky VM.

Methods Mol Biol. 2009;543:563-76. doi: 10.1007/978-1-60327-015-1_33.

9.

Internucleosomal interactions mediated by histone tails allow distant communication in chromatin.

Kulaeva OI, Zheng G, Polikanov YS, Colasanti AV, Clauvelin N, Mukhopadhyay S, Sengupta AM, Studitsky VM, Olson WK.

J Biol Chem. 2012 Jun 8;287(24):20248-57. doi: 10.1074/jbc.M111.333104. Epub 2012 Apr 19.

10.

Chromatin Higher-Order Folding: A Perspective with Linker DNA Angles.

Grigoryev SA.

Biophys J. 2018 May 22;114(10):2290-2297. doi: 10.1016/j.bpj.2018.03.009. Epub 2018 Apr 6. Review.

11.

The effect of internucleosomal interaction on folding of the chromatin fiber.

Stehr R, Kepper N, Rippe K, Wedemann G.

Biophys J. 2008 Oct;95(8):3677-91. doi: 10.1529/biophysj.107.120543. Epub 2008 Jul 25.

12.

The chromatin-remodeling enzyme ACF is an ATP-dependent DNA length sensor that regulates nucleosome spacing.

Yang JG, Madrid TS, Sevastopoulos E, Narlikar GJ.

Nat Struct Mol Biol. 2006 Dec;13(12):1078-83. Epub 2006 Nov 12.

PMID:
17099699
13.

Single-cell nucleosome mapping reveals the molecular basis of gene expression heterogeneity.

Small EC, Xi L, Wang JP, Widom J, Licht JD.

Proc Natl Acad Sci U S A. 2014 Jun 17;111(24):E2462-71. doi: 10.1073/pnas.1400517111. Epub 2014 Jun 2.

14.

HMGN1 and 2 remodel core and linker histone tail domains within chromatin.

Murphy KJ, Cutter AR, Fang H, Postnikov YV, Bustin M, Hayes JJ.

Nucleic Acids Res. 2017 Sep 29;45(17):9917-9930. doi: 10.1093/nar/gkx579.

15.

EM measurements define the dimensions of the "30-nm" chromatin fiber: evidence for a compact, interdigitated structure.

Robinson PJ, Fairall L, Huynh VA, Rhodes D.

Proc Natl Acad Sci U S A. 2006 Apr 25;103(17):6506-11. Epub 2006 Apr 14.

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18.

Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction.

Mueller B, Mieczkowski J, Kundu S, Wang P, Sadreyev R, Tolstorukov MY, Kingston RE.

Genes Dev. 2017 Mar 1;31(5):451-462. doi: 10.1101/gad.293118.116. Epub 2017 Mar 29.

19.

Regulation of the nucleosome repeat length in vivo by the DNA sequence, protein concentrations and long-range interactions.

Beshnova DA, Cherstvy AG, Vainshtein Y, Teif VB.

PLoS Comput Biol. 2014 Jul 3;10(7):e1003698. doi: 10.1371/journal.pcbi.1003698. eCollection 2014 Jul.

20.

Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1.

Bednar J, Garcia-Saez I, Boopathi R, Cutter AR, Papai G, Reymer A, Syed SH, Lone IN, Tonchev O, Crucifix C, Menoni H, Papin C, Skoufias DA, Kurumizaka H, Lavery R, Hamiche A, Hayes JJ, Schultz P, Angelov D, Petosa C, Dimitrov S.

Mol Cell. 2017 May 4;66(3):384-397.e8. doi: 10.1016/j.molcel.2017.04.012. Erratum in: Mol Cell. 2017 Jun 1;66(5):729.

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