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Items: 1 to 20 of 127

1.

Mergeomics: multidimensional data integration to identify pathogenic perturbations to biological systems.

Shu L, Zhao Y, Kurt Z, Byars SG, Tukiainen T, Kettunen J, Orozco LD, Pellegrini M, Lusis AJ, Ripatti S, Zhang B, Inouye M, Mäkinen VP, Yang X.

BMC Genomics. 2016 Nov 4;17(1):874.

2.

Mergeomics: a web server for identifying pathological pathways, networks, and key regulators via multidimensional data integration.

Arneson D, Bhattacharya A, Shu L, Mäkinen VP, Yang X.

BMC Genomics. 2016 Sep 9;17(1):722. doi: 10.1186/s12864-016-3057-8.

3.

Confero: an integrated contrast data and gene set platform for computational analysis and biological interpretation of omics data.

Hermida L, Poussin C, Stadler MB, Gubian S, Sewer A, Gaidatzis D, Hotz HR, Martin F, Belcastro V, Cano S, Peitsch MC, Hoeng J.

BMC Genomics. 2013 Jul 29;14:514. doi: 10.1186/1471-2164-14-514.

4.

RGAugury: a pipeline for genome-wide prediction of resistance gene analogs (RGAs) in plants.

Li P, Quan X, Jia G, Xiao J, Cloutier S, You FM.

BMC Genomics. 2016 Nov 2;17(1):852.

5.

iCTNet: a Cytoscape plugin to produce and analyze integrative complex traits networks.

Wang L, Khankhanian P, Baranzini SE, Mousavi P.

BMC Bioinformatics. 2011 Sep 26;12:380. doi: 10.1186/1471-2105-12-380.

6.

VAN: an R package for identifying biologically perturbed networks via differential variability analysis.

Jayaswal V, Schramm SJ, Mann GJ, Wilkins MR, Yang YH.

BMC Res Notes. 2013 Oct 25;6:430. doi: 10.1186/1756-0500-6-430.

7.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

8.

InterSIM: Simulation tool for multiple integrative 'omic datasets'.

Chalise P, Raghavan R, Fridley BL.

Comput Methods Programs Biomed. 2016 May;128:69-74. doi: 10.1016/j.cmpb.2016.02.011. Epub 2016 Feb 27.

9.
10.

Translational Metabolomics of Head Injury: Exploring Dysfunctional Cerebral Metabolism with Ex Vivo NMR Spectroscopy-Based Metabolite Quantification.

Wolahan SM, Hirt D, Glenn TC.

In: Kobeissy FH, editor. Brain Neurotrauma: Molecular, Neuropsychological, and Rehabilitation Aspects. Boca Raton (FL): CRC Press/Taylor & Francis; 2015. Chapter 25.

11.

Integrative Exploratory Analysis of Two or More Genomic Datasets.

Meng C, Culhane A.

Methods Mol Biol. 2016;1418:19-38. doi: 10.1007/978-1-4939-3578-9_2.

PMID:
27008008
12.

Integrative Analysis of Multi-omics Data for Discovery and Functional Studies of Complex Human Diseases.

Sun YV, Hu YJ.

Adv Genet. 2016;93:147-90. doi: 10.1016/bs.adgen.2015.11.004. Epub 2016 Jan 25. Review.

13.

A multivariate approach to the integration of multi-omics datasets.

Meng C, Kuster B, Culhane AC, Gholami AM.

BMC Bioinformatics. 2014 May 29;15:162. doi: 10.1186/1471-2105-15-162.

14.
15.

Gene Expression Browser: large-scale and cross-experiment microarray data integration, management, search & visualization.

Zhang M, Zhang Y, Liu L, Yu L, Tsang S, Tan J, Yao W, Kang MS, An Y, Fan X.

BMC Bioinformatics. 2010 Aug 20;11:433. doi: 10.1186/1471-2105-11-433.

16.

mixOmics: An R package for 'omics feature selection and multiple data integration.

Rohart F, Gautier B, Singh A, Lê Cao KA.

PLoS Comput Biol. 2017 Nov 3;13(11):e1005752. doi: 10.1371/journal.pcbi.1005752. eCollection 2017 Nov.

17.

BioBin: a bioinformatics tool for automating the binning of rare variants using publicly available biological knowledge.

Moore CB, Wallace JR, Frase AT, Pendergrass SA, Ritchie MD.

BMC Med Genomics. 2013;6 Suppl 2:S6. doi: 10.1186/1755-8794-6-S2-S6. Epub 2013 May 7.

18.

integrOmics: an R package to unravel relationships between two omics datasets.

Lê Cao KA, González I, Déjean S.

Bioinformatics. 2009 Nov 1;25(21):2855-6. doi: 10.1093/bioinformatics/btp515. Epub 2009 Aug 25.

19.

VirtualPlant: a software platform to support systems biology research.

Katari MS, Nowicki SD, Aceituno FF, Nero D, Kelfer J, Thompson LP, Cabello JM, Davidson RS, Goldberg AP, Shasha DE, Coruzzi GM, Gutiérrez RA.

Plant Physiol. 2010 Feb;152(2):500-15. doi: 10.1104/pp.109.147025. Epub 2009 Dec 9.

20.

GSAR: Bioconductor package for Gene Set analysis in R.

Rahmatallah Y, Zybailov B, Emmert-Streib F, Glazko G.

BMC Bioinformatics. 2017 Jan 24;18(1):61. doi: 10.1186/s12859-017-1482-6.

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