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Items: 1 to 20 of 193

1.

Co-expression network analysis of duplicate genes in maize (Zea mays L.) reveals no subgenome bias.

Li L, Briskine R, Schaefer R, Schnable PS, Myers CL, Flagel LE, Springer NM, Muehlbauer GJ.

BMC Genomics. 2016 Nov 4;17(1):875.

2.

Population Level Purifying Selection and Gene Expression Shape Subgenome Evolution in Maize.

Pophaly SD, Tellier A.

Mol Biol Evol. 2015 Dec;32(12):3226-35. doi: 10.1093/molbev/msv191. Epub 2015 Sep 15.

PMID:
26374232
3.

Functional Divergence between Subgenomes and Gene Pairs after Whole Genome Duplications.

Liang Z, Schnable JC.

Mol Plant. 2018 Mar 5;11(3):388-397. doi: 10.1016/j.molp.2017.12.010. Epub 2017 Dec 22. Review.

4.

Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize.

Schnable JC, Freeling M.

PLoS One. 2011 Mar 10;6(3):e17855. doi: 10.1371/journal.pone.0017855.

5.

Gene Fractionation and Function in the Ancient Subgenomes of Maize.

Renny-Byfield S, Rodgers-Melnick E, Ross-Ibarra J.

Mol Biol Evol. 2017 Aug 1;34(8):1825-1832. doi: 10.1093/molbev/msx121.

PMID:
28430989
6.

Comparison of the starch synthesis genes between maize and rice: copies, chromosome location and expression divergence.

Yan HB, Pan XX, Jiang HW, Wu GJ.

Theor Appl Genet. 2009 Sep;119(5):815-25. doi: 10.1007/s00122-009-1091-5. Epub 2009 Jul 11.

PMID:
19593540
7.

The impact of widespread regulatory neofunctionalization on homeolog gene evolution following whole-genome duplication in maize.

Hughes TE, Langdale JA, Kelly S.

Genome Res. 2014 Aug;24(8):1348-55. doi: 10.1101/gr.172684.114. Epub 2014 Apr 30.

8.

Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.

Zhao M, Zhang B, Lisch D, Ma J.

Plant Cell. 2017 Dec;29(12):2974-2994. doi: 10.1105/tpc.17.00595. Epub 2017 Nov 27.

9.

Tandem Duplicate Genes in Maize Are Abundant and Date to Two Distinct Periods of Time.

Kono TJY, Brohammer AB, McGaugh SE, Hirsch CN.

G3 (Bethesda). 2018 Aug 30;8(9):3049-3058. doi: 10.1534/g3.118.200580.

10.

Regulatory modules controlling early shade avoidance response in maize seedlings.

Wang H, Wu G, Zhao B, Wang B, Lang Z, Zhang C, Wang H.

BMC Genomics. 2016 Mar 31;17:269. doi: 10.1186/s12864-016-2593-6.

11.

Discovery of novel transcripts and gametophytic functions via RNA-seq analysis of maize gametophytic transcriptomes.

Chettoor AM, Givan SA, Cole RA, Coker CT, Unger-Wallace E, Vejlupkova Z, Vollbrecht E, Fowler JE, Evans MM.

Genome Biol. 2014 Jul 31;15(7):414. doi: 10.1186/s13059-014-0414-2.

12.

Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms.

Wang Y, Wang X, Tang H, Tan X, Ficklin SP, Feltus FA, Paterson AH.

PLoS One. 2011;6(12):e28150. doi: 10.1371/journal.pone.0028150. Epub 2011 Dec 2.

13.

Genomewide identification, classification and analysis of NAC type gene family in maize.

Peng X, Zhao Y, Li X, Wu M, Chai W, Sheng L, Wang Y, Dong Q, Jiang H, Cheng B.

J Genet. 2015 Sep;94(3):377-90.

14.

Genetic and epigenetic divergence of duplicate genes in two legume species.

Xu C, Nadon BD, Kim KD, Jackson SA.

Plant Cell Environ. 2018 Sep;41(9):2033-2044. doi: 10.1111/pce.13127. Epub 2018 Mar 4.

PMID:
29314059
15.

The limited role of differential fractionation in genome content variation and function in maize (Zea mays L.) inbred lines.

Brohammer AB, Kono TJY, Springer NM, McGaugh SE, Hirsch CN.

Plant J. 2018 Jan;93(1):131-141. doi: 10.1111/tpj.13765. Epub 2017 Dec 2.

16.
17.

Evolutionary dynamics and functional specialization of plant paralogs formed by whole and small-scale genome duplications.

Carretero-Paulet L, Fares MA.

Mol Biol Evol. 2012 Nov;29(11):3541-51. doi: 10.1093/molbev/mss162. Epub 2012 Jun 24.

18.

Different patterns of gene structure divergence following gene duplication in Arabidopsis.

Wang Y, Tan X, Paterson AH.

BMC Genomics. 2013 Sep 24;14:652. doi: 10.1186/1471-2164-14-652.

19.

Transcriptome analysis for identifying possible gene regulations during maize root emergence and formation at the initial growth stage.

Hwang SG, Kim KH, Lee BM, Moon JC.

Genes Genomics. 2018 Jul;40(7):755-766. doi: 10.1007/s13258-018-0687-z. Epub 2018 Apr 7.

PMID:
29934814
20.

Evolution of gene function and regulatory control after whole-genome duplication: comparative analyses in vertebrates.

Kassahn KS, Dang VT, Wilkins SJ, Perkins AC, Ragan MA.

Genome Res. 2009 Aug;19(8):1404-18. doi: 10.1101/gr.086827.108. Epub 2009 May 13.

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