Similar articles for PMID: 27789702

Year	Number of Results
2009	1
2010	5
2011	10
2012	8
2013	5
2014	15
2015	11
2016	27
2017	25
2018	35
2019	32
2020	25
2021	31
2022	19
2023	9
2024	0

1

Cistrome Data Browser: a data portal for ChIP-Seq and chromatin accessibility data in human and mouse.

Mei S, Qin Q, Wu Q, Sun H, Zheng R, Zang C, Zhu M, Wu J, Shi X, Taing L, Liu T, Brown M, Meyer CA, Liu XS. Mei S, et al. Nucleic Acids Res. 2017 Jan 4;45(D1):D658-D662. doi: 10.1093/nar/gkw983. Epub 2016 Oct 26. Nucleic Acids Res. 2017. PMID: 27789702 Free PMC article.

2

Cistrome Data Browser: expanded datasets and new tools for gene regulatory analysis.

Zheng R, Wan C, Mei S, Qin Q, Wu Q, Sun H, Chen CH, Brown M, Zhang X, Meyer CA, Liu XS. Zheng R, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D729-D735. doi: 10.1093/nar/gky1094. Nucleic Acids Res. 2019. PMID: 30462313 Free PMC article.

3

CistromeFinder for ChIP-seq and DNase-seq data reuse.

Sun H, Qin B, Liu T, Wang Q, Liu J, Wang J, Lin X, Yang Y, Taing L, Rao PK, Brown M, Zhang Y, Long HW, Liu XS. Sun H, et al. Bioinformatics. 2013 May 15;29(10):1352-4. doi: 10.1093/bioinformatics/btt135. Epub 2013 Mar 18. Bioinformatics. 2013. PMID: 23508969 Free PMC article.

4

TFmapper: A Tool for Searching Putative Factors Regulating Gene Expression Using ChIP-seq Data.

Zeng J, Li G. Zeng J, et al. Int J Biol Sci. 2018 Sep 7;14(12):1724-1731. doi: 10.7150/ijbs.28850. eCollection 2018. Int J Biol Sci. 2018. PMID: 30416387 Free PMC article.

5

ChiLin: a comprehensive ChIP-seq and DNase-seq quality control and analysis pipeline.

Qin Q, Mei S, Wu Q, Sun H, Li L, Taing L, Chen S, Li F, Liu T, Zang C, Xu H, Chen Y, Meyer CA, Zhang Y, Brown M, Long HW, Liu XS. Qin Q, et al. BMC Bioinformatics. 2016 Oct 3;17(1):404. doi: 10.1186/s12859-016-1274-4. BMC Bioinformatics. 2016. PMID: 27716038 Free PMC article.

6

Genome-Scale Analysis of Cell-Specific Regulatory Codes Using Nuclear Enzymes.

Baek S, Sung MH. Baek S, et al. Methods Mol Biol. 2016;1418:225-40. doi: 10.1007/978-1-4939-3578-9_12. Methods Mol Biol. 2016. PMID: 27008018 Free PMC article.

7

The ChIP-Seq tools and web server: a resource for analyzing ChIP-seq and other types of genomic data.

Ambrosini G, Dreos R, Kumar S, Bucher P. Ambrosini G, et al. BMC Genomics. 2016 Nov 18;17(1):938. doi: 10.1186/s12864-016-3288-8. BMC Genomics. 2016. PMID: 27863463 Free PMC article.

8

Cistrome Explorer: an interactive visual analysis tool for large-scale epigenomic data.

L'Yi S, Keller MS, Dandawate A, Taing L, Chen CH, Brown M, Meyer CA, Gehlenborg N. L'Yi S, et al. Bioinformatics. 2023 Feb 3;39(2):btad018. doi: 10.1093/bioinformatics/btad018. Bioinformatics. 2023. PMID: 36688700 Free PMC article.

9

XL-DNase-seq: improved footprinting of dynamic transcription factors.

Oh KS, Ha J, Baek S, Sung MH. Oh KS, et al. Epigenetics Chromatin. 2019 Jun 4;12(1):30. doi: 10.1186/s13072-019-0277-6. Epigenetics Chromatin. 2019. PMID: 31164146 Free PMC article.

10

NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.

Mendoza-Parra MA, Saleem MA, Blum M, Cholley PE, Gronemeyer H. Mendoza-Parra MA, et al. Methods Mol Biol. 2016;1418:243-65. doi: 10.1007/978-1-4939-3578-9_13. Methods Mol Biol. 2016. PMID: 27008019

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