Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 83

1.

Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2.

Miettinen O, Riley R, Barry K, Cullen D, de Vries RP, Hainaut M, Hatakka A, Henrissat B, Hildén K, Kuo R, LaButti K, Lipzen A, Mäkelä MR, Sandor L, Spatafora JW, Grigoriev IV, Hibbett DS.

Genome Announc. 2016 Sep 15;4(5). pii: e00976-16. doi: 10.1128/genomeA.00976-16.

2.

Temporal transcriptome analysis of the white-rot fungus Obba rivulosa shows expression of a constitutive set of plant cell wall degradation targeted genes during growth on solid spruce wood.

Marinović M, Aguilar-Pontes MV, Zhou M, Miettinen O, de Vries RP, Mäkelä MR, Hildén K.

Fungal Genet Biol. 2018 Mar;112:47-54. doi: 10.1016/j.fgb.2017.07.004. Epub 2017 Jul 25.

PMID:
28754284
3.

Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation.

Min B, Park H, Jang Y, Kim JJ, Kim KH, Pangilinan J, Lipzen A, Riley R, Grigoriev IV, Spatafora JW, Choi IG.

J Biotechnol. 2015 Oct 10;211:42-3. doi: 10.1016/j.jbiotec.2015.06.426. Epub 2015 Jul 15.

PMID:
26188242
4.

Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay.

Hori C, Gaskell J, Igarashi K, Samejima M, Hibbett D, Henrissat B, Cullen D.

Mycologia. 2013 Nov-Dec;105(6):1412-27. doi: 10.3852/13-072. Epub 2013 Aug 9.

PMID:
23935027
5.

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi.

Riley R, Salamov AA, Brown DW, Nagy LG, Floudas D, Held BW, Levasseur A, Lombard V, Morin E, Otillar R, Lindquist EA, Sun H, LaButti KM, Schmutz J, Jabbour D, Luo H, Baker SE, Pisabarro AG, Walton JD, Blanchette RA, Henrissat B, Martin F, Cullen D, Hibbett DS, Grigoriev IV.

Proc Natl Acad Sci U S A. 2014 Jul 8;111(27):9923-8. doi: 10.1073/pnas.1400592111. Epub 2014 Jun 23. Erratum in: Proc Natl Acad Sci U S A. 2014 Oct 14;111(41):14959.

6.

Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose.

Kuuskeri J, Häkkinen M, Laine P, Smolander OP, Tamene F, Miettinen S, Nousiainen P, Kemell M, Auvinen P, Lundell T.

Biotechnol Biofuels. 2016 Sep 5;9(1):192. doi: 10.1186/s13068-016-0608-9. eCollection 2016.

7.

Draft Genome Sequence of the Fungus Trametes hirsuta 072.

Pavlov AR, Tyazhelova TV, Moiseenko KV, Vasina DV, Mosunova OV, Fedorova TV, Maloshenok LG, Landesman EO, Bruskin SA, Psurtseva NV, Slesarev AI, Kozyavkin SA, Koroleva OV.

Genome Announc. 2015 Nov 19;3(6). pii: e01287-15. doi: 10.1128/genomeA.01287-15.

8.

Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii.

Floudas D, Held BW, Riley R, Nagy LG, Koehler G, Ransdell AS, Younus H, Chow J, Chiniquy J, Lipzen A, Tritt A, Sun H, Haridas S, LaButti K, Ohm RA, Kües U, Blanchette RA, Grigoriev IV, Minto RE, Hibbett DS.

Fungal Genet Biol. 2015 Mar;76:78-92. doi: 10.1016/j.fgb.2015.02.002. Epub 2015 Feb 12.

9.

Evidence from Serpula lacrymans that 2,5-dimethoxyhydroquinone Is a lignocellulolytic agent of divergent brown rot basidiomycetes.

Korripally P, Timokhin VI, Houtman CJ, Mozuch MD, Hammel KE.

Appl Environ Microbiol. 2013 Apr;79(7):2377-83. doi: 10.1128/AEM.03880-12. Epub 2013 Feb 1.

10.

Draft genome sequence of Trametes villosa (Sw.) Kreisel CCMB561, a tropical white-rot Basidiomycota from the semiarid region of Brazil.

Ferreira DSS, Kato RB, Miranda FM, da Costa Pinheiro K, Fonseca PLC, Tomé LMR, Vaz ABM, Badotti F, Ramos RTJ, Brenig B, Azevedo VAC, Benevides RG, Góes-Neto A.

Data Brief. 2018 Apr 25;18:1581-1587. doi: 10.1016/j.dib.2018.04.074. eCollection 2018 Jun.

11.

Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion.

Martinez D, Challacombe J, Morgenstern I, Hibbett D, Schmoll M, Kubicek CP, Ferreira P, Ruiz-Duenas FJ, Martinez AT, Kersten P, Hammel KE, Vanden Wymelenberg A, Gaskell J, Lindquist E, Sabat G, Bondurant SS, Larrondo LF, Canessa P, Vicuna R, Yadav J, Doddapaneni H, Subramanian V, Pisabarro AG, Lavín JL, Oguiza JA, Master E, Henrissat B, Coutinho PM, Harris P, Magnuson JK, Baker SE, Bruno K, Kenealy W, Hoegger PJ, Kües U, Ramaiya P, Lucas S, Salamov A, Shapiro H, Tu H, Chee CL, Misra M, Xie G, Teter S, Yaver D, James T, Mokrejs M, Pospisek M, Grigoriev IV, Brettin T, Rokhsar D, Berka R, Cullen D.

Proc Natl Acad Sci U S A. 2009 Feb 10;106(6):1954-9. doi: 10.1073/pnas.0809575106. Epub 2009 Feb 4.

12.

Genome sequence of the white-rot fungus Irpex lacteus F17, a type strain of lignin degrader fungus.

Yao M, Li W, Duan Z, Zhang Y, Jia R.

Stand Genomic Sci. 2017 Sep 12;12:55. doi: 10.1186/s40793-017-0267-x. eCollection 2017.

13.

The genome of the white-rot fungus Pycnoporus cinnabarinus: a basidiomycete model with a versatile arsenal for lignocellulosic biomass breakdown.

Levasseur A, Lomascolo A, Chabrol O, Ruiz-Dueñas FJ, Boukhris-Uzan E, Piumi F, Kües U, Ram AF, Murat C, Haon M, Benoit I, Arfi Y, Chevret D, Drula E, Kwon MJ, Gouret P, Lesage-Meessen L, Lombard V, Mariette J, Noirot C, Park J, Patyshakuliyeva A, Sigoillot JC, Wiebenga A, Wösten HA, Martin F, Coutinho PM, de Vries RP, Martínez AT, Klopp C, Pontarotti P, Henrissat B, Record E.

BMC Genomics. 2014 Jun 18;15:486. doi: 10.1186/1471-2164-15-486.

14.

Lignin-modifying enzymes in filamentous basidiomycetes--ecological, functional and phylogenetic review.

Lundell TK, Mäkelä MR, Hildén K.

J Basic Microbiol. 2010 Feb;50(1):5-20. doi: 10.1002/jobm.200900338. Review.

PMID:
20175122
15.

Fungal biodegradation of lignopolystyrene graft copolymers.

Milstein O, Gersonde R, Huttermann A, Chen MJ, Meister JJ.

Appl Environ Microbiol. 1992 Oct;58(10):3225-32.

16.

Integrated delignification and simultaneous saccharification and fermentation of hard wood by a white-rot fungus, Phlebia sp. MG-60.

Kamei I, Hirota Y, Meguro S.

Bioresour Technol. 2012 Dec;126:137-41. doi: 10.1016/j.biortech.2012.09.007. Epub 2012 Sep 13.

PMID:
23073100
17.

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level.

Battaglia E, Benoit I, van den Brink J, Wiebenga A, Coutinho PM, Henrissat B, de Vries RP.

BMC Genomics. 2011 Jan 17;12:38. doi: 10.1186/1471-2164-12-38.

18.

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.

Suzuki H, MacDonald J, Syed K, Salamov A, Hori C, Aerts A, Henrissat B, Wiebenga A, VanKuyk PA, Barry K, Lindquist E, LaButti K, Lapidus A, Lucas S, Coutinho P, Gong Y, Samejima M, Mahadevan R, Abou-Zaid M, de Vries RP, Igarashi K, Yadav JS, Grigoriev IV, Master ER.

BMC Genomics. 2012 Sep 2;13:444. doi: 10.1186/1471-2164-13-444.

19.

Lignin-degrading peroxidases in Polyporales: an evolutionary survey based on 10 sequenced genomes.

Ruiz-Dueñas FJ, Lundell T, Floudas D, Nagy LG, Barrasa JM, Hibbett DS, Martínez AT.

Mycologia. 2013 Nov-Dec;105(6):1428-44. doi: 10.3852/13-059. Epub 2013 Aug 6.

20.

Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga.

Mäkelä MR, Peng M, Granchi Z, Chin-A-Woeng T, Hegi R, van Pelt SI, Ahrendt S, Riley R, Hainaut M, Henrissat B, Grigoriev IV, de Vries RP, Hildén KS.

Genome Announc. 2018 Apr 5;6(14). pii: e01414-17. doi: 10.1128/genomeA.01414-17.

Supplemental Content

Support Center