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Items: 1 to 20 of 193

1.

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA.

BMC Genomics. 2016 Sep 13;17(1):730. doi: 10.1186/s12864-016-3081-8. Erratum in: BMC Genomics. 2016 Nov 4;17 (1):869.

2.

A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

G3 (Bethesda). 2014 Jan 10;4(1):29-37. doi: 10.1534/g3.113.008714.

3.

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS.

G3 (Bethesda). 2015 Jun 11;5(8):1685-94. doi: 10.1534/g3.115.019588.

4.

Whole-exome targeted sequencing of the uncharacterized pine genome.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

Plant J. 2013 Jul;75(1):146-156. doi: 10.1111/tpj.12193. Epub 2013 May 7.

5.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.

6.
7.

Exome Resequencing Reveals Evolutionary History, Genomic Diversity, and Targets of Selection in the Conifers Pinus taeda and Pinus elliottii.

Acosta JJ, Fahrenkrog AM, Neves LG, Resende MFR, Dervinis C, Davis JM, Holliday JA, Kirst M.

Genome Biol Evol. 2019 Feb 1;11(2):508-520. doi: 10.1093/gbe/evz016.

8.

Association of loblolly pine xylem development gene expression with single-nucleotide polymorphisms.

Palle SR, Seeve CM, Eckert AJ, Wegrzyn JL, Neale DB, Loopstra CA.

Tree Physiol. 2013 Jul;33(7):763-74. doi: 10.1093/treephys/tpt054.

PMID:
23933831
9.

Complete chloroplast genome sequence and comparative analysis of loblolly pine (Pinus taeda L.) with related species.

Asaf S, Khan AL, Khan MA, Shahzad R, Lubna, Kang SM, Al-Harrasi A, Al-Rawahi A, Lee IJ.

PLoS One. 2018 Mar 29;13(3):e0192966. doi: 10.1371/journal.pone.0192966. eCollection 2018.

10.

Exploring the loblolly pine (Pinus taeda L.) genome by BAC sequencing and Cot analysis.

Perera D, Magbanua ZV, Thummasuwan S, Mukherjee D, Arick M 2nd, Chouvarine P, Nairn CJ, Schmutz J, Grimwood J, Dean JFD, Peterson DG.

Gene. 2018 Jul 15;663:165-177. doi: 10.1016/j.gene.2018.04.024. Epub 2018 Apr 12.

11.

Nucleotide diversity and linkage disequilibrium in loblolly pine.

Brown GR, Gill GP, Kuntz RJ, Langley CH, Neale DB.

Proc Natl Acad Sci U S A. 2004 Oct 19;101(42):15255-60. Epub 2004 Oct 11.

12.

An annotated genetic map of loblolly pine based on microsatellite and cDNA markers.

Echt CS, Saha S, Krutovsky KV, Wimalanathan K, Erpelding JE, Liang C, Nelson CD.

BMC Genet. 2011 Jan 26;12:17. doi: 10.1186/1471-2156-12-17.

13.

Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine.

Xiong JS, McKeand SE, Isik F, Wegrzyn J, Neale DB, Zeng ZB, da Costa E Silva L, Whetten RW.

BMC Genet. 2016 Oct 18;17(1):138.

14.

DNA sequence variation and selection of tag single-nucleotide polymorphisms at candidate genes for drought-stress response in Pinus taeda L.

González-Martínez SC, Ersoz E, Brown GR, Wheeler NC, Neale DB.

Genetics. 2006 Mar;172(3):1915-26. Epub 2005 Dec 30.

15.

Back to nature: ecological genomics of loblolly pine (Pinus taeda, Pinaceae).

Eckert AJ, Bower AD, González-Martínez SC, Wegrzyn JL, Coop G, Neale DB.

Mol Ecol. 2010 Sep;19(17):3789-805. doi: 10.1111/j.1365-294X.2010.04698.x. Epub 2010 Aug 13.

PMID:
20723060
16.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.

17.

Leaf-level gas-exchange uniformity and photosynthetic capacity among loblolly pine (Pinus taeda L.) genotypes of contrasting inherent genetic variation.

Aspinwall MJ, King JS, McKeand SE, Domec JC.

Tree Physiol. 2011 Jan;31(1):78-91. doi: 10.1093/treephys/tpq107.

PMID:
21389004
18.

Genetic mapping of Pinus flexilis major gene (Cr4) for resistance to white pine blister rust using transcriptome-based SNP genotyping.

Liu JJ, Schoettle AW, Sniezko RA, Sturrock RN, Zamany A, Williams H, Ha A, Chan D, Danchok B, Savin DP, Kegley A.

BMC Genomics. 2016 Sep 23;17(1):753.

19.

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome.

Eckert AJ, Wegrzyn JL, Cumbie WP, Goldfarb B, Huber DA, Tolstikov V, Fiehn O, Neale DB.

New Phytol. 2012 Mar;193(4):890-902. doi: 10.1111/j.1469-8137.2011.03976.x. Epub 2011 Nov 30.

20.

Genetic effects on total phenolics, condensed tannins and non-structural carbohydrates in loblolly pine (Pinus taeda L.) needles.

Aspinwall MJ, King JS, Booker FL, McKeand SE.

Tree Physiol. 2011 Aug;31(8):831-42. doi: 10.1093/treephys/tpr073. Epub 2011 Aug 9.

PMID:
21831860

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