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Items: 1 to 20 of 107

1.

The health care and life sciences community profile for dataset descriptions.

Dumontier M, Gray AJG, Marshall MS, Alexiev V, Ansell P, Bader G, Baran J, Bolleman JT, Callahan A, Cruz-Toledo J, Gaudet P, Gombocz EA, Gonzalez-Beltran AN, Groth P, Haendel M, Ito M, Jupp S, Juty N, Katayama T, Kobayashi N, Krishnaswami K, Laibe C, Le Novère N, Lin S, Malone J, Miller M, Mungall CJ, Rietveld L, Wimalaratne SM, Yamaguchi A.

PeerJ. 2016 Aug 16;4:e2331. doi: 10.7717/peerj.2331. eCollection 2016.

2.

linkedISA: semantic representation of ISA-Tab experimental metadata.

González-Beltrán A, Maguire E, Sansone SA, Rocca-Serra P.

BMC Bioinformatics. 2014;15 Suppl 14:S4. doi: 10.1186/1471-2105-15-S14-S4. Epub 2014 Nov 27.

3.

Scientific Reproducibility in Biomedical Research: Provenance Metadata Ontology for Semantic Annotation of Study Description.

Sahoo SS, Valdez J, Rueschman M.

AMIA Annu Symp Proc. 2017 Feb 10;2016:1070-1079. eCollection 2016.

4.

Semantic Web repositories for genomics data using the eXframe platform.

Merrill E, Corlosquet S, Ciccarese P, Clark T, Das S.

J Biomed Semantics. 2014 Jun 3;5(Suppl 1 Proceedings of the Bio-Ontologies Spec Interest G):S3. doi: 10.1186/2041-1480-5-S1-S3. eCollection 2014.

5.

Semantic enrichment of longitudinal clinical study data using the CDISC standards and the semantic statistics vocabularies.

Leroux H, Lefort L.

J Biomed Semantics. 2015 Apr 9;6:16. doi: 10.1186/s13326-015-0012-6. eCollection 2015.

6.

PAV ontology: provenance, authoring and versioning.

Ciccarese P, Soiland-Reyes S, Belhajjame K, Gray AJ, Goble C, Clark T.

J Biomed Semantics. 2013 Nov 22;4(1):37. doi: 10.1186/2041-1480-4-37.

7.

A semantic proteomics dashboard (SemPoD) for data management in translational research.

Jayapandian CP, Zhao M, Ewing RM, Zhang GQ, Sahoo SS.

BMC Syst Biol. 2012;6 Suppl 3:S20. doi: 10.1186/1752-0509-6-S3-S20. Epub 2012 Dec 17.

8.

Metadata element set in a quality-controlled subject gateway: a step to a health semantic Web.

Thirion B, Loosli G, Douyère M, Darmoni SJ.

Stud Health Technol Inform. 2003;95:707-12.

PMID:
14664071
9.

Querying phenotype-genotype relationships on patient datasets using semantic web technology: the example of Cerebrotendinous xanthomatosis.

Taboada M, Martínez D, Pilo B, Jiménez-Escrig A, Robinson PN, Sobrido MJ.

BMC Med Inform Decis Mak. 2012 Jul 31;12:78. doi: 10.1186/1472-6947-12-78.

10.

Metadata management and semantics in microarray repositories.

Kocabaş F, Can T, Baykal N.

Balkan J Med Genet. 2011 Dec;14(2):49-64. doi: 10.2478/v10034-011-0047-7.

12.

YeastHub: a semantic web use case for integrating data in the life sciences domain.

Cheung KH, Yip KY, Smith A, Deknikker R, Masiar A, Gerstein M.

Bioinformatics. 2005 Jun;21 Suppl 1:i85-96.

PMID:
15961502
13.

A journey to Semantic Web query federation in the life sciences.

Cheung KH, Frost HR, Marshall MS, Prud'hommeaux E, Samwald M, Zhao J, Paschke A.

BMC Bioinformatics. 2009 Oct 1;10 Suppl 10:S10. doi: 10.1186/1471-2105-10-S10-S10.

14.

Provenance Context Entity (PaCE): Scalable Provenance Tracking for Scientific RDF Data.

Sahoo SS, Bodenreider O, Hitzler P, Sheth A, Thirunarayan K.

Sci Stat Database Manag. 2010;6187:461-470.

15.

Biotea: RDFizing PubMed Central in support for the paper as an interface to the Web of Data.

Garcia Castro LJ, McLaughlin C, Garcia A.

J Biomed Semantics. 2013 Apr 15;4 Suppl 1:S5. doi: 10.1186/2041-1480-4-S1-S5. Epub 2013 Apr 15.

16.

New concepts for building vocabulary for cell image ontologies.

Plant AL, Elliott JT, Bhat TN.

BMC Bioinformatics. 2011 Dec 21;12:487. doi: 10.1186/1471-2105-12-487.

17.

AlzPharm: integration of neurodegeneration data using RDF.

Lam HY, Marenco L, Clark T, Gao Y, Kinoshita J, Shepherd G, Miller P, Wu E, Wong GT, Liu N, Crasto C, Morse T, Stephens S, Cheung KH.

BMC Bioinformatics. 2007 May 9;8 Suppl 3:S4.

18.

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.

Sharma DK, Solbrig HR, Tao C, Weng C, Chute CG, Jiang G.

J Biomed Semantics. 2017 Jun 5;8(1):19. doi: 10.1186/s13326-017-0130-4.

19.

An open annotation ontology for science on web 3.0.

Ciccarese P, Ocana M, Garcia Castro LJ, Das S, Clark T.

J Biomed Semantics. 2011 May 17;2 Suppl 2:S4. doi: 10.1186/2041-1480-2-S2-S4.

20.

Cleaning by clustering: methodology for addressing data quality issues in biomedical metadata.

Hu W, Zaveri A, Qiu H, Dumontier M.

BMC Bioinformatics. 2017 Sep 18;18(1):415. doi: 10.1186/s12859-017-1832-4.

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