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Items: 1 to 20 of 114

1.

Living apart together: crosstalk between the core and supernumerary genomes in a fungal plant pathogen.

Vanheule A, Audenaert K, Warris S, van de Geest H, Schijlen E, Höfte M, De Saeger S, Haesaert G, Waalwijk C, van der Lee T.

BMC Genomics. 2016 Aug 23;17:670. doi: 10.1186/s12864-016-2941-6.

2.

The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola.

Dhillon B, Gill N, Hamelin RC, Goodwin SB.

BMC Genomics. 2014 Dec 17;15:1132. doi: 10.1186/1471-2164-15-1132.

3.

Gapless genome assembly of Colletotrichum higginsianum reveals chromosome structure and association of transposable elements with secondary metabolite gene clusters.

Dallery JF, Lapalu N, Zampounis A, Pigné S, Luyten I, Amselem J, Wittenberg AHJ, Zhou S, de Queiroz MV, Robin GP, Auger A, Hainaut M, Henrissat B, Kim KT, Lee YH, Lespinet O, Schwartz DC, Thon MR, O'Connell RJ.

BMC Genomics. 2017 Aug 29;18(1):667. doi: 10.1186/s12864-017-4083-x.

4.

The genome of Nectria haematococca: contribution of supernumerary chromosomes to gene expansion.

Coleman JJ, Rounsley SD, Rodriguez-Carres M, Kuo A, Wasmann CC, Grimwood J, Schmutz J, Taga M, White GJ, Zhou S, Schwartz DC, Freitag M, Ma LJ, Danchin EG, Henrissat B, Coutinho PM, Nelson DR, Straney D, Napoli CA, Barker BM, Gribskov M, Rep M, Kroken S, Molnár I, Rensing C, Kennell JC, Zamora J, Farman ML, Selker EU, Salamov A, Shapiro H, Pangilinan J, Lindquist E, Lamers C, Grigoriev IV, Geiser DM, Covert SF, Temporini E, Vanetten HD.

PLoS Genet. 2009 Aug;5(8):e1000618. doi: 10.1371/journal.pgen.1000618. Epub 2009 Aug 28.

5.

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae.

Thon MR, Pan H, Diener S, Papalas J, Taro A, Mitchell TK, Dean RA.

Genome Biol. 2006;7(2):R16. Epub 2006 Feb 28.

6.

Identification of Highly Variable Supernumerary Chromosome Segments in an Asexual Pathogen.

Huang X, Das A, Sahu BB, Srivastava SK, Leandro LF, O'Donnell K, Bhattacharyya MK.

PLoS One. 2016 Jun 24;11(6):e0158183. doi: 10.1371/journal.pone.0158183. eCollection 2016.

7.

Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis.

Santana MF, Silva JC, Batista AD, Ribeiro LE, da Silva GF, de Araújo EF, de Queiroz MV.

BMC Genomics. 2012 Dec 22;13:720. doi: 10.1186/1471-2164-13-720.

8.

Chromosome arm-specific BAC end sequences permit comparative analysis of homoeologous chromosomes and genomes of polyploid wheat.

Sehgal SK, Li W, Rabinowicz PD, Chan A, Simková H, Doležel J, Gill BS.

BMC Plant Biol. 2012 May 4;12:64. doi: 10.1186/1471-2229-12-64.

9.

Characterization of three DNA transposons in the Dutch elm disease fungi and evidence of repeat-induced point (RIP) mutations.

Bouvet GF, Jacobi V, Bernier L.

Fungal Genet Biol. 2007 May;44(5):430-43. Epub 2006 Dec 16.

PMID:
17291794
10.

Repeat-induced point mutation and the population structure of transposable elements in Microbotryum violaceum.

Hood ME, Katawczik M, Giraud T.

Genetics. 2005 Jul;170(3):1081-9. Epub 2005 May 23.

11.

Supernumerary chromosomes in filamentous fungi.

Covert SF.

Curr Genet. 1998 May;33(5):311-9. Review.

PMID:
9618581
12.

Karyotype Variability in Plant-Pathogenic Fungi.

Mehrabi R, Mirzadi Gohari A, Kema GHJ.

Annu Rev Phytopathol. 2017 Aug 4;55:483-503. doi: 10.1146/annurev-phyto-080615-095928. Review.

PMID:
28777924
13.

Comparative genomics of a plant-pathogenic fungus, Pyrenophora tritici-repentis, reveals transduplication and the impact of repeat elements on pathogenicity and population divergence.

Manning VA, Pandelova I, Dhillon B, Wilhelm LJ, Goodwin SB, Berlin AM, Figueroa M, Freitag M, Hane JK, Henrissat B, Holman WH, Kodira CD, Martin J, Oliver RP, Robbertse B, Schackwitz W, Schwartz DC, Spatafora JW, Turgeon BG, Yandava C, Young S, Zhou S, Zeng Q, Grigoriev IV, Ma LJ, Ciuffetti LM.

G3 (Bethesda). 2013 Jan;3(1):41-63. doi: 10.1534/g3.112.004044. Epub 2013 Jan 1.

14.

Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.

Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV.

PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037. Epub 2012 Dec 6. Erratum in: PLoS Pathog. 2013 Mar 5;9(3):.

15.

Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi.

Gladyshev E.

Microbiol Spectr. 2017 Jul;5(4). doi: 10.1128/microbiolspec.FUNK-0042-2017. Review.

16.

Titration of repeat-induced point mutation (RIP) by chromosome segment duplications in Neurospora crassa.

Singh PK, Kasbekar DP.

Genetica. 2008 Nov;134(3):267-75. Epub 2007 Nov 29.

PMID:
18046508
17.

Whole genome comparative analysis of transposable elements provides new insight into mechanisms of their inactivation in fungal genomes.

Amselem J, Lebrun MH, Quesneville H.

BMC Genomics. 2015 Feb 28;16:141. doi: 10.1186/s12864-015-1347-1.

18.

The genome assembly of the fungal pathogen Pyrenochaeta lycopersici from Single-Molecule Real-Time sequencing sheds new light on its biological complexity.

Dal Molin A, Minio A, Griggio F, Delledonne M, Infantino A, Aragona M.

PLoS One. 2018 Jul 6;13(7):e0200217. doi: 10.1371/journal.pone.0200217. eCollection 2018.

19.

BAC end sequences and a physical map reveal transposable element content and clustering patterns in the genome of Magnaporthe grisea.

Thon MR, Martin SL, Goff S, Wing RA, Dean RA.

Fungal Genet Biol. 2004 Jul;41(7):657-66.

PMID:
15275661
20.

Accessories Make the Outfit: Accessory Chromosomes and Other Dispensable DNA Regions in Plant-Pathogenic Fungi.

Bertazzoni S, Williams AH, Jones DA, Syme RA, Tan KC, Hane JK.

Mol Plant Microbe Interact. 2018 Aug;31(8):779-788. doi: 10.1094/MPMI-06-17-0135-FI. Epub 2018 Jun 28. Review.

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