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Items: 1 to 20 of 138

1.

The Future of Whole-Genome Sequencing for Public Health and the Clinic.

Allard MW.

J Clin Microbiol. 2016 Aug;54(8):1946-8. doi: 10.1128/JCM.01082-16. Epub 2016 Jun 15.

2.

Whole genome sequencing in clinical and public health microbiology.

Kwong JC, McCallum N, Sintchenko V, Howden BP.

Pathology. 2015 Apr;47(3):199-210. doi: 10.1097/PAT.0000000000000235. Review.

3.

The diagnosis of infectious diseases by whole genome next generation sequencing: a new era is opening.

Lecuit M, Eloit M.

Front Cell Infect Microbiol. 2014 Mar 6;4:25. doi: 10.3389/fcimb.2014.00025. eCollection 2014. Review. No abstract available.

4.

Making the Leap from Research Laboratory to Clinic: Challenges and Opportunities for Next-Generation Sequencing in Infectious Disease Diagnostics.

Goldberg B, Sichtig H, Geyer C, Ledeboer N, Weinstock GM.

MBio. 2015 Dec 8;6(6):e01888-15. doi: 10.1128/mBio.01888-15. Review.

5.

Next-generation sequencing and its applications in molecular diagnostics.

Su Z, Ning B, Fang H, Hong H, Perkins R, Tong W, Shi L.

Expert Rev Mol Diagn. 2011 Apr;11(3):333-43. doi: 10.1586/erm.11.3. Review.

PMID:
21463242
6.
7.

Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory.

Dunne WM Jr, Westblade LF, Ford B.

Eur J Clin Microbiol Infect Dis. 2012 Aug;31(8):1719-26. doi: 10.1007/s10096-012-1641-7. Epub 2012 Jun 8. Review.

PMID:
22678348
8.

Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe.

Aanensen DM, Feil EJ, Holden MT, Dordel J, Yeats CA, Fedosejev A, Goater R, Castillo-Ramírez S, Corander J, Colijn C, Chlebowicz MA, Schouls L, Heck M, Pluister G, Ruimy R, Kahlmeter G, Åhman J, Matuschek E, Friedrich AW, Parkhill J, Bentley SD, Spratt BG, Grundmann H; European SRL Working Group.

MBio. 2016 May 5;7(3). pii: e00444-16. doi: 10.1128/mBio.00444-16.

9.

Next-Generation Sequencing for Infectious Disease Diagnosis and Management: A Report of the Association for Molecular Pathology.

Lefterova MI, Suarez CJ, Banaei N, Pinsky BA.

J Mol Diagn. 2015 Nov;17(6):623-34. doi: 10.1016/j.jmoldx.2015.07.004. Epub 2015 Sep 30. Review.

PMID:
26433313
10.

Development of rationally designed nucleic acid signatures for microbial pathogens.

Cleland CA, White PS, Deshpande A, Wolinsky M, Song J, Nolan JP.

Expert Rev Mol Diagn. 2004 May;4(3):303-15. Review.

PMID:
15137898
11.

Next generation sequencing for whole genome analysis and surveillance of influenza A viruses.

McGinnis J, Laplante J, Shudt M, George KS.

J Clin Virol. 2016 Jun;79:44-50. doi: 10.1016/j.jcv.2016.03.005. Epub 2016 Mar 9. Erratum in: J Clin Virol. 2017 Aug;93:65.

PMID:
27085509
12.

Rapid whole-genome sequencing for detection and characterization of microorganisms directly from clinical samples.

Hasman H, Saputra D, Sicheritz-Ponten T, Lund O, Svendsen CA, Frimodt-Møller N, Aarestrup FM.

J Clin Microbiol. 2014 Jan;52(1):139-46. doi: 10.1128/JCM.02452-13. Epub 2013 Oct 30. Erratum in: J Clin Microbiol. 2014 Aug;52(8):3136.

13.

Bioinformatics in bacterial molecular epidemiology and public health: databases, tools and the next-generation sequencing revolution.

Carriço JA, Sabat AJ, Friedrich AW, Ramirez M; ESCMID Study Group for Epidemiological Markers (ESGEM).

Euro Surveill. 2013 Jan 24;18(4):20382. Review.

14.

Genomic Epidemiology: Whole-Genome-Sequencing-Powered Surveillance and Outbreak Investigation of Foodborne Bacterial Pathogens.

Deng X, den Bakker HC, Hendriksen RS.

Annu Rev Food Sci Technol. 2016;7:353-74. doi: 10.1146/annurev-food-041715-033259. Epub 2016 Jan 11. Review.

PMID:
26772415
15.

Bioinformatics Data Analysis of Next-Generation Sequencing Data from Heterogeneous Tumor Samples.

Landman SR, Hwang TH.

Methods Mol Biol. 2017;1633:185-192. doi: 10.1007/978-1-4939-7142-8_12.

PMID:
28735488
16.

Emerging Concepts and Technologies for the Discovery of Microorganisms Involved in Human Disease.

Bullman S, Meyerson M, Kostic AD.

Annu Rev Pathol. 2017 Jan 24;12:217-244. doi: 10.1146/annurev-pathol-012615-044305. Epub 2016 Dec 5. Review.

PMID:
27959634
17.

New generation sequencing in pathogen discovery and microbial surveillance.

Calistri A, Salata C, Parolin C, Palù G.

Expert Rev Anti Infect Ther. 2013 Sep;11(9):877-9. doi: 10.1586/14787210.2013.827883.

PMID:
24053269
18.

New methods for identifying infectious diseases.

Greatorex J, Ellington MJ, Köser CU, Rolfe KJ, Curran MD.

Br Med Bull. 2014 Dec;112(1):27-35. doi: 10.1093/bmb/ldu027. Epub 2014 Oct 1. Review.

PMID:
25274572
19.

A crash course in sequencing for a microbiologist.

Kozińska A, Seweryn P, Sitkiewicz I.

J Appl Genet. 2019 Feb;60(1):103-111. doi: 10.1007/s13353-019-00482-2. Epub 2019 Jan 25. Review.

20.

Bacterial population genomics and infectious disease diagnostics.

Joseph SJ, Read TD.

Trends Biotechnol. 2010 Dec;28(12):611-8. doi: 10.1016/j.tibtech.2010.09.001. Epub 2010 Oct 18. Review.

PMID:
20961641

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