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Items: 1 to 20 of 131

1.

IOTA: integration optimization, triage and analysis tool for the processing of XFEL diffraction images.

Lyubimov AY, Uervirojnangkoorn M, Zeldin OB, Brewster AS, Murray TD, Sauter NK, Berger JM, Weis WI, Brunger AT.

J Appl Crystallogr. 2016 May 11;49(Pt 3):1057-1064. eCollection 2016 Jun 1.

2.

Whole-pattern fitting technique in serial femtosecond nanocrystallography.

Dilanian RA, Williams SR, Martin AV, Streltsov VA, Quiney HM.

IUCrJ. 2016 Feb 12;3(Pt 2):127-38. doi: 10.1107/S2052252516001238. eCollection 2016 Mar 1.

3.

Resolving indexing ambiguities in X-ray free-electron laser diffraction patterns.

Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Weis WI, Brunger AT.

Acta Crystallogr D Struct Biol. 2019 Feb 1;75(Pt 2):234-241. doi: 10.1107/S2059798318013177. Epub 2019 Feb 6.

4.

On the release of cppxfel for processing X-ray free-electron laser images.

Ginn HM, Evans G, Sauter NK, Stuart DI.

J Appl Crystallogr. 2016 May 11;49(Pt 3):1065-1072. eCollection 2016 Jun 1.

5.

An improved integration method in serial femtosecond crystallography.

Qu K, Zhou L, Dong YH.

Acta Crystallogr D Biol Crystallogr. 2014 May;70(Pt 5):1202-11. doi: 10.1107/S1399004714002004. Epub 2014 Apr 26.

PMID:
24816090
6.

The indexing ambiguity in serial femtosecond crystallography (SFX) resolved using an expectation maximization algorithm.

Liu H, Spence JC.

IUCrJ. 2014 Sep 23;1(Pt 6):393-401. doi: 10.1107/S2052252514020314. eCollection 2014 Nov 1.

7.

TakeTwo: an indexing algorithm suited to still images with known crystal parameters.

Ginn HM, Roedig P, Kuo A, Evans G, Sauter NK, Ernst OP, Meents A, Mueller-Werkmeister H, Miller RJ, Stuart DI.

Acta Crystallogr D Struct Biol. 2016 Aug;72(Pt 8):956-65. doi: 10.1107/S2059798316010706. Epub 2016 Jul 28.

8.

Processing of XFEL Data.

White TA.

Methods Mol Biol. 2017;1607:325-347. doi: 10.1007/978-1-4939-7000-1_13. Review.

PMID:
28573579
9.

Indexing amyloid peptide diffraction from serial femtosecond crystallography: new algorithms for sparse patterns.

Brewster AS, Sawaya MR, Rodriguez J, Hattne J, Echols N, McFarlane HT, Cascio D, Adams PD, Eisenberg DS, Sauter NK.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):357-66. doi: 10.1107/S1399004714026145. Epub 2015 Jan 23.

10.

Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Yamashita K, Kuwabara N, Nakane T, Murai T, Mizohata E, Sugahara M, Pan D, Masuda T, Suzuki M, Sato T, Kodan A, Yamaguchi T, Nango E, Tanaka T, Tono K, Joti Y, Kameshima T, Hatsui T, Yabashi M, Manya H, Endo T, Kato R, Senda T, Kato H, Iwata S, Ago H, Yamamoto M, Yumoto F, Nakatsu T.

IUCrJ. 2017 Aug 8;4(Pt 5):639-647. doi: 10.1107/S2052252517008557. eCollection 2017 Sep 1.

11.

Asymmetry in serial femtosecond crystallography data.

Sharma A, Johansson L, Dunevall E, Wahlgren WY, Neutze R, Katona G.

Acta Crystallogr A Found Adv. 2017 Mar 1;73(Pt 2):93-101. doi: 10.1107/S2053273316018696. Epub 2017 Jan 30.

12.

Data Exploration Toolkit for serial diffraction experiments.

Zeldin OB, Brewster AS, Hattne J, Uervirojnangkoorn M, Lyubimov AY, Zhou Q, Zhao M, Weis WI, Sauter NK, Brunger AT.

Acta Crystallogr D Biol Crystallogr. 2015 Feb;71(Pt 2):352-6. doi: 10.1107/S1399004714025875. Epub 2015 Jan 23.

13.

A Bright Future for Serial Femtosecond Crystallography with XFELs.

Johansson LC, Stauch B, Ishchenko A, Cherezov V.

Trends Biochem Sci. 2017 Sep;42(9):749-762. doi: 10.1016/j.tibs.2017.06.007. Epub 2017 Jul 18. Review.

14.

Protein structure determination by single-wavelength anomalous diffraction phasing of X-ray free-electron laser data.

Nass K, Meinhart A, Barends TR, Foucar L, Gorel A, Aquila A, Botha S, Doak RB, Koglin J, Liang M, Shoeman RL, Williams G, Boutet S, Schlichting I.

IUCrJ. 2016 Mar 9;3(Pt 3):180-91. doi: 10.1107/S2052252516002980. eCollection 2016 May 1.

15.

In vivo crystallography at X-ray free-electron lasers: the next generation of structural biology?

Gallat FX, Matsugaki N, Coussens NP, Yagi KJ, Boudes M, Higashi T, Tsuji D, Tatano Y, Suzuki M, Mizohata E, Tono K, Joti Y, Kameshima T, Park J, Song C, Hatsui T, Yabashi M, Nango E, Itoh K, Coulibaly F, Tobe S, Ramaswamy S, Stay B, Iwata S, Chavas LM.

Philos Trans R Soc Lond B Biol Sci. 2014 Jul 17;369(1647):20130497. doi: 10.1098/rstb.2013.0497.

16.

Serial femtosecond crystallography at the SACLA: breakthrough to dynamic structural biology.

Mizohata E, Nakane T, Fukuda Y, Nango E, Iwata S.

Biophys Rev. 2018 Apr;10(2):209-218. doi: 10.1007/s12551-017-0344-9. Epub 2017 Dec 1. Review.

17.

Serial femtosecond X-ray diffraction of 30S ribosomal subunit microcrystals in liquid suspension at ambient temperature using an X-ray free-electron laser.

Demirci H, Sierra RG, Laksmono H, Shoeman RL, Botha S, Barends TR, Nass K, Schlichting I, Doak RB, Gati C, Williams GJ, Boutet S, Messerschmidt M, Jogl G, Dahlberg AE, Gregory ST, Bogan MJ.

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Sep;69(Pt 9):1066-9. doi: 10.1107/S174430911302099X. Epub 2013 Aug 19.

18.

Effects of self-seeding and crystal post-selection on the quality of Monte Carlo-integrated SFX data.

Barends T, White TA, Barty A, Foucar L, Messerschmidt M, Alonso-Mori R, Botha S, Chapman H, Doak RB, Galli L, Gati C, Gutmann M, Koglin J, Markvardsen A, Nass K, Oberthur D, Shoeman RL, Schlichting I, Boutet S.

J Synchrotron Radiat. 2015 May;22(3):644-52. doi: 10.1107/S1600577515005184. Epub 2015 Apr 22.

PMID:
25931080
19.

Native phasing of x-ray free-electron laser data for a G protein-coupled receptor.

Batyuk A, Galli L, Ishchenko A, Han GW, Gati C, Popov PA, Lee MY, Stauch B, White TA, Barty A, Aquila A, Hunter MS, Liang M, Boutet S, Pu M, Liu ZJ, Nelson G, James D, Li C, Zhao Y, Spence JC, Liu W, Fromme P, Katritch V, Weierstall U, Stevens RC, Cherezov V.

Sci Adv. 2016 Sep 23;2(9):e1600292. eCollection 2016 Sep.

20.

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals.

Uervirojnangkoorn M, Zeldin OB, Lyubimov AY, Hattne J, Brewster AS, Sauter NK, Brunger AT, Weis WI.

Elife. 2015 Mar 17;4. doi: 10.7554/eLife.05421.

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