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27268483,22513206,29902967,11962626,15071730,26940065,29904390,28841400,34247248,27317430,26754002,23819624,28913899,27902806,32856221,27898821,27295982,26011256,23184232,25534138,29626084,26407618,19450286,25150411,23331642,26093611,27226165,15526086,26902470,31894400,16708235,25403353,16699555,15619078,26984673,35831814,21421365,29575237,27422157,19943086,28077090,23505311,27251557,27172201,22849334,27538483,25612459,17683574,26318155,11986876,17647019,26951780,33144392,26883039,27898812,32856713,26303721,23324311,28132151,31554715,15558228,22419761,17207264,27887567,29017444,16133316,26003111,21889047,29264625,26704908,26530417,30506318,26935901,27547936,26115486,30715119,28213629,23216845,18281692,26430886,23372741,26161900,23137269,28381212,23469194,26892170,25762582,32348345,26631981,27845353,18575835,16240106,28284188,23706002,30258215,30408053,27010567,23521852,29281959,28250016,29625552,24098570,30463521,30898899,28049422,30111279,26244767,25900564,23918062,32425961,20089196,28364036,18446316,19414502,30460569,29357832,32930789,21554765,21148585,16390418,28959273,20078886,25126744,25031181,24669946,28915793,21492453,31046664,28079141,29247258,25104762,32853533,29619038,22389690,33339898,24863701,29570820,29635481,28387238,32101299,23127152,31049634,30816245,34721449,24192835,19484189,27624183,29487138,18346108,26617611,32955620,29738551,35037217,30507961,19835600,23947483,23049744,30979937,26408275,28042915,33004874,29608694,31167834,33883006,22558443,26074933,8111042,23690931,18504541,25047601,22204490,29402214,32835354,26044731,23665877,29973633,30325414,23265623,17701396,19500419,23349638,31722668,26151830,20981402,24587335,21421385,30689773,31434917,30367597,30158944,23153393,36271055,34654820,14634728,31821695,22662172,28369353,30496513,29860624,22192763,34870479,30615624,36007888,36015475,20370931,30915092,26936254,27172223,33754631,29509991,11439115,18542912,23689743,32398234,29036272,23410831,29224072,12964866,30321264,36538186,20498060,34834630,21192788,30649288,35658547,36512171,33175097,23550121,36386808,31367745,31199572,29356847,32727925,26421146,28281636,29950429,24916310,11181995,26772750,24078685,31912659,30972478,27902790,32408580,29902971,25385325,24498047,33301094,31893447,21324207,30076781,33519834,26932983,27171472,27611682,28824669,30697405,35348671,28220139,30961563,32033920,29688035,26473145,20617301,31217262,34544134,28875078,23402685,24521263,22214349,29925783,33228324,36897387,33372615,28526729,20576142,29878181,24416366,28680431,26633193,22108025,28620209,25610449,30616525,25620878,30382832,27760996,34365519,29071392,32193408,26886859,15289478,22333298,36740716,33128049,30951089,30451840,31806765,23731509,29427639,34544121,31320920,24905985,35451789,24767513,31802146,34783230,29897548,32647329,17415594,23714049,25123423,28854926,33016594,32631227,30690988,23432348,32973856,29496460,26787189,27898767,35818000,30184439,32241919,11029002,33098268,31544937,33006480,35956532,34438684,35525918,29020755,25373334,26040700,36367622,30668828,35490362,34424280,31713630,30181764,30020434,33301093,33476468,34351050,32546503,22537301,32531446,27942246,32019414,23915543,22103327,35743891,25071835,33856017,11237013,30220910,20063009,27346054,31061473,30841290,32231688,12019244,26828719,21573248,27374610,28366402,36193572,33317445,31228151,26006006,24784959,9582121,18470175,33874365,23284958,28033408,24531727,33949648,27549770,30774947,23246509,33371875,25128786,28985339,29367590,35975565,24306492,35100403,35022701,31857331,30680137,11595500,22384329,33274050,29089958,33669871,12519964,26366245,29893845,31602298,25887893,27762049,24558267,30525216,26528321,30184062,31009151,21941532,27821852,30534135,21689413,18836033,31512748,34568925,12175079,23144973,27379109,28592987,10985027,28223996,34760384,25202520,29897334,30346553,32752081,29204149,30701254,29294012,29253216,24828244,23695301,32817122,36035270,28078808,24987520,31776332,33127893,35986355,34051323,20972442,36824523,32509273,28559908,35372836,31548511,35774992,19381348,28369214,22523606,32793774,33873957,28287462,36003814,29785397,36330812,24202515,23299976,30812215,30854479,24201371,34288487,31160919,16661009,32983016,30957265,36927388,33187521,37002915,27408618,29774036,31116387,33333952,33483627,24193783,35513782,32994441,22174069,36167181,24832503,24435685,16345261,15239900,31649706,36644701,32677034,30780695,30254741,14769938,29259608,34490044,35633675,19684856,34315525,22669902,31159868,33048598,14761299,31290097,32688842,28832569,30445432,36814455,37127332,36756284,35684208,36824517,7129956,34695194,6629855,22649659,27366783,26484140,30304855,32760550,22367192,31739171,32133028,24429490,36824341,34349118,26955481,24177782,36605965,28050346,24253910,24276682,23223940,36824333,23587420,34711884,36778692,36928286,36386825,24227483,37097026,29333237,31377530,25056481,24481788,29423810,21576222,21589938,16661708,27437175,34051082,29541656,16658313,36968794,31015470,29371354,33659468,34540250,36420084,24704915,32633910,23186305,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An ultra-high density genetic linkage map of perennial ryegrass (Lolium perenne) using genotyping by sequencing (GBS) based on a reference shotgun genome assembly.

Velmurugan J, Mollison E, Barth S, Marshall D, Milne L, Creevey CJ, Lynch B, Meally H, McCabe M, Milbourne D. Velmurugan J, et al. Ann Bot. 2016 Jul;118(1):71-87. doi: 10.1093/aob/mcw081. Epub 2016 Jun 6. Ann Bot. 2016. PMID: 27268483 Free PMC article.

A transcriptome map of perennial ryegrass (Lolium perenne L.).

Studer B, Byrne S, Nielsen RO, Panitz F, Bendixen C, Islam MS, Pfeifer M, Lübberstedt T, Asp T. Studer B, et al. BMC Genomics. 2012 Apr 18;13:140. doi: 10.1186/1471-2164-13-140. BMC Genomics. 2012. PMID: 22513206 Free PMC article.

UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study.

Qi P, Gimode D, Saha D, Schröder S, Chakraborty D, Wang X, Dida MM, Malmberg RL, Devos KM. Qi P, et al. BMC Plant Biol. 2018 Jun 15;18(1):117. doi: 10.1186/s12870-018-1316-3. BMC Plant Biol. 2018. PMID: 29902967 Free PMC article.

An enhanced molecular marker based genetic map of perennial ryegrass (Lolium perenne) reveals comparative relationships with other Poaceae genomes.

Jones ES, Mahoney NL, Hayward MD, Armstead IP, Jones JG, Humphreys MO, King IP, Kishida T, Yamada T, Balfourier F, Charmet G, Forster JW. Jones ES, et al. Genome. 2002 Apr;45(2):282-95. doi: 10.1139/g01-144. Genome. 2002. PMID: 11962626 Free article.

Genetic linkage mapping of an annual x perennial ryegrass population.

Warnke SE, Barker RE, Jung G, Sim SC, Rouf Mian MA, Saha MC, Brilman LA, Dupal MP, Forster JW. Warnke SE, et al. Theor Appl Genet. 2004 Jul;109(2):294-304. doi: 10.1007/s00122-004-1647-3. Epub 2004 Apr 7. Theor Appl Genet. 2004. PMID: 15071730

Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines.

Zhou Z, Zhang C, Zhou Y, Hao Z, Wang Z, Zeng X, Di H, Li M, Zhang D, Yong H, Zhang S, Weng J, Li X. Zhou Z, et al. BMC Genomics. 2016 Mar 3;17:178. doi: 10.1186/s12864-016-2555-z. BMC Genomics. 2016. PMID: 26940065 Free PMC article.

An Immortalized Genetic Mapping Population for Perennial Ryegrass: A Resource for Phenotyping and Complex Trait Mapping.

Velmurugan J, Milbourne D, Connolly V, Heslop-Harrison JS, Anhalt UCM, Lynch MB, Barth S. Velmurugan J, et al. Front Plant Sci. 2018 May 31;9:717. doi: 10.3389/fpls.2018.00717. eCollection 2018. Front Plant Sci. 2018. PMID: 29904390 Free PMC article.

Reference transcriptome assembly and annotation for perennial ryegrass.

Shinozuka H, Cogan NOI, Spangenberg GC, Forster JW. Shinozuka H, et al. Genome. 2017 Dec;60(12):1086-1088. doi: 10.1139/gen-2017-0077. Epub 2017 Aug 25. Genome. 2017. PMID: 28841400

Ultralong Oxford Nanopore Reads Enable the Development of a Reference-Grade Perennial Ryegrass Genome Assembly.

Frei D, Veekman E, Grogg D, Stoffel-Studer I, Morishima A, Shimizu-Inatsugi R, Yates S, Shimizu KK, Frey JE, Studer B, Copetti D. Frei D, et al. Genome Biol Evol. 2021 Aug 3;13(8):evab159. doi: 10.1093/gbe/evab159. Genome Biol Evol. 2021. PMID: 34247248 Free PMC article.

Construction of a high-density, high-quality genetic map of cultivated lotus (Nelumbo nucifera) using next-generation sequencing.

Liu Z, Zhu H, Liu Y, Kuang J, Zhou K, Liang F, Liu Z, Wang D, Ke W. Liu Z, et al. BMC Genomics. 2016 Jun 17;17:466. doi: 10.1186/s12864-016-2781-4. BMC Genomics. 2016. PMID: 27317430 Free PMC article.

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