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Individuality, Stability, and Variability of the Plaque Microbiome.

Utter DR, Mark Welch JL, Borisy GG.

Front Microbiol. 2016 Apr 22;7:564. doi: 10.3389/fmicb.2016.00564. eCollection 2016.


Dynamics of tongue microbial communities with single-nucleotide resolution using oligotyping.

Mark Welch JL, Utter DR, Rossetti BJ, Mark Welch DB, Eren AM, Borisy GG.

Front Microbiol. 2014 Nov 7;5:568. doi: 10.3389/fmicb.2014.00568. eCollection 2014.


Oligotyping analysis of the human oral microbiome.

Eren AM, Borisy GG, Huse SM, Mark Welch JL.

Proc Natl Acad Sci U S A. 2014 Jul 15;111(28):E2875-84. doi: 10.1073/pnas.1409644111. Epub 2014 Jun 25.


Inter-Individual Differences in the Oral Bacteriome Are Greater than Intra-Day Fluctuations in Individuals.

Sato Y, Yamagishi J, Yamashita R, Shinozaki N, Ye B, Yamada T, Yamamoto M, Nagasaki M, Tsuboi A.

PLoS One. 2015 Jun 29;10(6):e0131607. doi: 10.1371/journal.pone.0131607. eCollection 2015.


The impact of various time intervals on the supragingival plaque dynamic core microbiome.

Jiang WX, Hu YJ, Gao L, He ZY, Zhu CL, Ma R, Huang ZW.

PLoS One. 2015 May 5;10(5):e0124631. doi: 10.1371/journal.pone.0124631. eCollection 2015.


Oligotyping reveals differences between gut microbiomes of free-ranging sympatric Namibian carnivores (Acinonyx jubatus, Canis mesomelas) on a bacterial species-like level.

Menke S, Wasimuddin, Meier M, Melzheimer J, Mfune JK, Heinrich S, Thalwitzer S, Wachter B, Sommer S.

Front Microbiol. 2014 Oct 14;5:526. doi: 10.3389/fmicb.2014.00526. eCollection 2014.


A single genus in the gut microbiome reflects host preference and specificity.

Eren AM, Sogin ML, Morrison HG, Vineis JH, Fisher JC, Newton RJ, McLellan SL.

ISME J. 2015 Jan;9(1):90-100. doi: 10.1038/ismej.2014.97. Epub 2014 Jun 17.


Population dynamics and ecology of Arcobacter in sewage.

Fisher JC, Levican A, Figueras MJ, McLellan SL.

Front Microbiol. 2014 Nov 7;5:525. doi: 10.3389/fmicb.2014.00525. eCollection 2014.


Plaque bacterial microbiome diversity in children younger than 30 months with or without caries prior to eruption of second primary molars.

Xu H, Hao W, Zhou Q, Wang W, Xia Z, Liu C, Chen X, Qin M, Chen F.

PLoS One. 2014 Feb 28;9(2):e89269. doi: 10.1371/journal.pone.0089269. eCollection 2014.


Sewage reflects the microbiomes of human populations.

Newton RJ, McLellan SL, Dila DK, Vineis JH, Morrison HG, Eren AM, Sogin ML.

MBio. 2015 Feb 24;6(2):e02574. doi: 10.1128/mBio.02574-14.


Preliminary characterization of the oral microbiota of Chinese adults with and without gingivitis.

Huang S, Yang F, Zeng X, Chen J, Li R, Wen T, Li C, Wei W, Liu J, Chen L, Davis C, Xu J.

BMC Oral Health. 2011 Dec 12;11:33. doi: 10.1186/1472-6831-11-33.


Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison.

Ahn J, Yang L, Paster BJ, Ganly I, Morris L, Pei Z, Hayes RB.

PLoS One. 2011;6(7):e22788. doi: 10.1371/journal.pone.0022788. Epub 2011 Jul 29.


Oligotyping reveals stronger relationship of organic soil bacterial community structure with N-amendments and soil chemistry in comparison to that of mineral soil at Harvard Forest, MA, USA.

Turlapati SA, Minocha R, Long S, Ramsdell J, Minocha SC.

Front Microbiol. 2015 Feb 16;6:49. doi: 10.3389/fmicb.2015.00049. eCollection 2015.


An in vitro biofilm model system maintaining a highly reproducible species and metabolic diversity approaching that of the human oral microbiome.

Edlund A, Yang Y, Hall AP, Guo L, Lux R, He X, Nelson KE, Nealson KH, Yooseph S, Shi W, McLean JS.

Microbiome. 2013 Oct 2;1(1):25. doi: 10.1186/2049-2618-1-25.


Bacterial Diversity and Community Structure of Supragingival Plaques in Adults with Dental Health or Caries Revealed by 16S Pyrosequencing.

Xiao C, Ran S, Huang Z, Liang J.

Front Microbiol. 2016 Jul 22;7:1145. doi: 10.3389/fmicb.2016.01145. eCollection 2016.


A Single Vibrionales 16S rRNA Oligotype Dominates the Intestinal Microbiome in Two Geographically Separated Atlantic cod Populations.

Riiser ES, Haverkamp THA, Borgan Ø, Jakobsen KS, Jentoft S, Star B.

Front Microbiol. 2018 Jul 13;9:1561. doi: 10.3389/fmicb.2018.01561. eCollection 2018.


Advancements toward a systems level understanding of the human oral microbiome.

McLean JS.

Front Cell Infect Microbiol. 2014 Jul 29;4:98. doi: 10.3389/fcimb.2014.00098. eCollection 2014. Review.


Supragingival Microbial Profiles of Permanent and Deciduous Teeth in Children with Mixed Dentition.

Shi W, Qin M, Chen F, Xia B.

PLoS One. 2016 Jan 11;11(1):e0146938. doi: 10.1371/journal.pone.0146938. eCollection 2016.


Variation in bacterial DGGE patterns from human saliva: over time, between individuals and in corresponding dental plaque microcosms.

Rasiah IA, Wong L, Anderson SA, Sissons CH.

Arch Oral Biol. 2005 Sep;50(9):779-87. Epub 2005 Mar 5.


Microbiome interaction with sugar plays an important role in relapse of childhood caries.

Tian J, Qin M, Ma W, Xia B, Xu H, Zhang Q, Chen F.

Biochem Biophys Res Commun. 2015 Dec 4-11;468(1-2):294-9. doi: 10.1016/j.bbrc.2015.10.110. Epub 2015 Oct 23.


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