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Items: 1 to 20 of 180

1.

Systematic review of next-generation sequencing simulators: computational tools, features and perspectives.

Zhao M, Liu D, Qu H.

Brief Funct Genomics. 2017 May 1;16(3):121-128. doi: 10.1093/bfgp/elw012. Review.

PMID:
27069250
2.

Sequencing technologies and genome sequencing.

Pareek CS, Smoczynski R, Tretyn A.

J Appl Genet. 2011 Nov;52(4):413-35. doi: 10.1007/s13353-011-0057-x. Epub 2011 Jun 23. Review.

3.

Ten years of next-generation sequencing technology.

van Dijk EL, Auger H, Jaszczyszyn Y, Thermes C.

Trends Genet. 2014 Sep;30(9):418-26. doi: 10.1016/j.tig.2014.07.001. Epub 2014 Aug 6. Review.

PMID:
25108476
4.

systemPipeR: NGS workflow and report generation environment.

H Backman TW, Girke T.

BMC Bioinformatics. 2016 Sep 20;17:388. doi: 10.1186/s12859-016-1241-0.

5.

[The application of next generation sequencing on epigenetic study].

Shen S, Qu Y, Zhang J.

Yi Chuan. 2014 Mar;36(3):256-75. Review. Chinese.

PMID:
24846966
6.

Rare Event Detection Using Error-corrected DNA and RNA Sequencing.

Wong WH, Tong RS, Young AL, Druley TE.

J Vis Exp. 2018 Aug 3;(138). doi: 10.3791/57509.

7.

Library preparation methods for next-generation sequencing: tone down the bias.

van Dijk EL, Jaszczyszyn Y, Thermes C.

Exp Cell Res. 2014 Mar 10;322(1):12-20. doi: 10.1016/j.yexcr.2014.01.008. Epub 2014 Jan 15. Review.

PMID:
24440557
8.

Application of next generation sequencing to human gene fusion detection: computational tools, features and perspectives.

Wang Q, Xia J, Jia P, Pao W, Zhao Z.

Brief Bioinform. 2013 Jul;14(4):506-19. doi: 10.1093/bib/bbs044. Epub 2012 Aug 9. Review.

9.

NGS-pipe: a flexible, easily extendable and highly configurable framework for NGS analysis.

Singer J, Ruscheweyh HJ, Hofmann AL, Thurnherr T, Singer F, Toussaint NC, Ng CKY, Piscuoglio S, Beisel C, Christofori G, Dummer R, Hall MN, Krek W, Levesque MP, Manz MG, Moch H, Papassotiropoulos A, Stekhoven DJ, Wild P, Wüst T, Rinn B, Beerenwinkel N.

Bioinformatics. 2018 Jan 1;34(1):107-108. doi: 10.1093/bioinformatics/btx540.

10.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

11.

BSPAT: a fast online tool for DNA methylation co-occurrence pattern analysis based on high-throughput bisulfite sequencing data.

Hu K, Ting AH, Li J.

BMC Bioinformatics. 2015 Jul 11;16:220. doi: 10.1186/s12859-015-0649-2.

12.

RNA sequencing: from sample preparation to analysis.

Maekawa S, Suzuki A, Sugano S, Suzuki Y.

Methods Mol Biol. 2014;1164:51-65. doi: 10.1007/978-1-4939-0805-9_6.

PMID:
24927835
13.

A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing.

Al Kawam A, Khatri S, Datta A.

IEEE/ACM Trans Comput Biol Bioinform. 2017 Nov-Dec;14(6):1202-1213. doi: 10.1109/TCBB.2016.2586070. Epub 2016 Jun 29.

PMID:
27362989
14.

Next-Generation Sequencing for MicroRNA Expression Profile.

Hu Y, Lan W, Miller D.

Methods Mol Biol. 2017;1617:169-177. doi: 10.1007/978-1-4939-7046-9_12.

PMID:
28540684
15.

Library construction for next-generation sequencing: overviews and challenges.

Head SR, Komori HK, LaMere SA, Whisenant T, Van Nieuwerburgh F, Salomon DR, Ordoukhanian P.

Biotechniques. 2014 Feb 1;56(2):61-4, 66, 68, passim. doi: 10.2144/000114133. eCollection 2014. Review.

16.

NGS-QC Generator: A Quality Control System for ChIP-Seq and Related Deep Sequencing-Generated Datasets.

Mendoza-Parra MA, Saleem MA, Blum M, Cholley PE, Gronemeyer H.

Methods Mol Biol. 2016;1418:243-65. doi: 10.1007/978-1-4939-3578-9_13.

PMID:
27008019
17.

Next-generation sequencing and its applications in molecular diagnostics.

Su Z, Ning B, Fang H, Hong H, Perkins R, Tong W, Shi L.

Expert Rev Mol Diagn. 2011 Apr;11(3):333-43. doi: 10.1586/erm.11.3. Review.

PMID:
21463242
18.

Use of Next Generation Sequencing (NGS) technologies for the genome-wide detection of transposition.

Elbaidouri M, Chaparro C, Panaud O.

Methods Mol Biol. 2013;1057:265-74. doi: 10.1007/978-1-62703-568-2_19.

PMID:
23918435
19.

Recent novel approaches for population genomics data analysis.

Andrews KR, Luikart G.

Mol Ecol. 2014 Apr;23(7):1661-7. doi: 10.1111/mec.12686.

PMID:
24495199
20.

Next-generation sequencing (NGS) in the microbiological world: How to make the most of your money.

Vincent AT, Derome N, Boyle B, Culley AI, Charette SJ.

J Microbiol Methods. 2017 Jul;138:60-71. doi: 10.1016/j.mimet.2016.02.016. Epub 2016 Mar 16. Review.

PMID:
26995332

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