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Items: 1 to 20 of 110

1.

A naïve Bayesian classifier for identifying plant microRNAs.

Douglass S, Hsu SW, Cokus S, Goldberg RB, Harada JJ, Pellegrini M.

Plant J. 2016 Jun;86(6):481-92. doi: 10.1111/tpj.13180. Epub 2016 Jun 20.

2.

Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets.

Wang XJ, Reyes JL, Chua NH, Gaasterland T.

Genome Biol. 2004;5(9):R65. Epub 2004 Aug 31.

3.
4.

Genome wide identification of chilling responsive microRNAs in Prunus persica.

Barakat A, Sriram A, Park J, Zhebentyayeva T, Main D, Abbott A.

BMC Genomics. 2012 Sep 15;13:481. doi: 10.1186/1471-2164-13-481.

5.

In silico identification of conserved microRNAs in large number of diverse plant species.

Sunkar R, Jagadeeswaran G.

BMC Plant Biol. 2008 Apr 16;8:37. doi: 10.1186/1471-2229-8-37.

6.

Identification of miRNAs and their target genes in developing soybean seeds by deep sequencing.

Song QX, Liu YF, Hu XY, Zhang WK, Ma B, Chen SY, Zhang JS.

BMC Plant Biol. 2011 Jan 10;11:5. doi: 10.1186/1471-2229-11-5.

7.

Identification and profiling of novel microRNAs in the Brassica rapa genome based on small RNA deep sequencing.

Kim B, Yu HJ, Park SG, Shin JY, Oh M, Kim N, Mun JH.

BMC Plant Biol. 2012 Nov 19;12:218. doi: 10.1186/1471-2229-12-218.

8.

Computational identification of novel microRNAs and targets in Brassica napus.

Xie FL, Huang SQ, Guo K, Xiang AL, Zhu YY, Nie L, Yang ZM.

FEBS Lett. 2007 Apr 3;581(7):1464-74. Epub 2007 Mar 8.

9.

Prediction of novel miRNAs and associated target genes in Glycine max.

Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S14. doi: 10.1186/1471-2105-11-S1-S14.

10.

Ab initio identification of human microRNAs based on structure motifs.

Brameier M, Wiuf C.

BMC Bioinformatics. 2007 Dec 18;8:478.

11.

Identification of Taxus microRNAs and their targets with high-throughput sequencing and degradome analysis.

Hao DC, Yang L, Xiao PG, Liu M.

Physiol Plant. 2012 Dec;146(4):388-403. doi: 10.1111/j.1399-3054.2012.01668.x. Epub 2012 Jul 25.

PMID:
22708792
12.

Discovery of barley miRNAs through deep sequencing of short reads.

Schreiber AW, Shi BJ, Huang CY, Langridge P, Baumann U.

BMC Genomics. 2011 Feb 25;12:129. doi: 10.1186/1471-2164-12-129.

13.

MatureBayes: a probabilistic algorithm for identifying the mature miRNA within novel precursors.

Gkirtzou K, Tsamardinos I, Tsakalides P, Poirazi P.

PLoS One. 2010 Aug 6;5(8):e11843. doi: 10.1371/journal.pone.0011843.

14.

PlantMiRNAPred: efficient classification of real and pseudo plant pre-miRNAs.

Xuan P, Guo M, Liu X, Huang Y, Li W, Huang Y.

Bioinformatics. 2011 May 15;27(10):1368-76. doi: 10.1093/bioinformatics/btr153. Epub 2011 Mar 26.

PMID:
21441575
15.

A computational-based update on microRNAs and their targets in barley (Hordeum vulgare L.).

Colaiacovo M, Subacchi A, Bagnaresi P, Lamontanara A, Cattivelli L, Faccioli P.

BMC Genomics. 2010 Oct 22;11:595. doi: 10.1186/1471-2164-11-595.

16.

Identification of conserved and novel microRNAs in Catharanthus roseus by deep sequencing and computational prediction of their potential targets.

Prakash P, Ghosliya D, Gupta V.

Gene. 2015 Jan 10;554(2):181-95. doi: 10.1016/j.gene.2014.10.046. Epub 2014 Oct 28.

PMID:
25445288
17.

Identification and characterization of new plant microRNAs using EST analysis.

Zhang BH, Pan XP, Wang QL, Cobb GP, Anderson TA.

Cell Res. 2005 May;15(5):336-60.

18.

Identification of soybean seed developmental stage-specific and tissue-specific miRNA targets by degradome sequencing.

Shamimuzzaman M, Vodkin L.

BMC Genomics. 2012 Jul 16;13:310. doi: 10.1186/1471-2164-13-310.

19.

Bioinformatic identification and expression analysis of new microRNAs from Medicago truncatula.

Zhou ZS, Huang SQ, Yang ZM.

Biochem Biophys Res Commun. 2008 Sep 26;374(3):538-42. doi: 10.1016/j.bbrc.2008.07.083. Epub 2008 Jul 26.

PMID:
18662674
20.

Investigating the regulatory roles of the microRNAs and the Argonaute 1-enriched small RNAs in plant metabolism.

Qin J, Tang Z, Ma X, Meng Y.

Gene. 2017 Sep 10;628:180-189. doi: 10.1016/j.gene.2017.07.016. Epub 2017 Jul 8.

PMID:
28698160

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