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Items: 1 to 20 of 102

1.

Loop-Mediated Isothermal Amplification (LAMP) for Rapid Detection and Quantification of Dehalococcoides Biomarker Genes in Commercial Reductive Dechlorinating Cultures KB-1 and SDC-9.

Kanitkar YH, Stedtfeld RD, Steffan RJ, Hashsham SA, Cupples AM.

Appl Environ Microbiol. 2016 Jan 8;82(6):1799-1806. doi: 10.1128/AEM.03660-15.

2.

Most probable number with visual based LAMP for the quantification of reductive dehalogenase genes in groundwater samples.

Kanitkar YH, Stedtfeld RD, Hatzinger PB, Hashsham SA, Cupples AM.

J Microbiol Methods. 2017 Dec;143:44-49. doi: 10.1016/j.mimet.2017.10.003. Epub 2017 Oct 12.

PMID:
29031631
3.

Quantifying genes and transcripts to assess the in situ physiology of "Dehalococcoides" spp. in a trichloroethene-contaminated groundwater site.

Lee PK, Macbeth TW, Sorenson KS Jr, Deeb RA, Alvarez-Cohen L.

Appl Environ Microbiol. 2008 May;74(9):2728-39. doi: 10.1128/AEM.02199-07. Epub 2008 Mar 7.

4.

Development and application of a rapid, user-friendly, and inexpensive method to detect Dehalococcoides sp. reductive dehalogenase genes from groundwater.

Kanitkar YH, Stedtfeld RD, Hatzinger PB, Hashsham SA, Cupples AM.

Appl Microbiol Biotechnol. 2017 Jun;101(11):4827-4835. doi: 10.1007/s00253-017-8203-y. Epub 2017 Feb 25.

PMID:
28238079
5.

Direct loop mediated isothermal amplification on filters for quantification of Dehalobacter in groundwater.

Stedtfeld RD, Stedtfeld TM, Samhan F, Kanitkar YH, Hatzinger PB, Cupples AM, Hashsham SA.

J Microbiol Methods. 2016 Dec;131:61-67. doi: 10.1016/j.mimet.2016.09.025. Epub 2016 Oct 5.

6.

Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains.

Ritalahti KM, Amos BK, Sung Y, Wu Q, Koenigsberg SS, Löffler FE.

Appl Environ Microbiol. 2006 Apr;72(4):2765-74.

7.

GeneCARD-FISH: detection of tceA and vcrA reductive dehalogenase genes in Dehalococcoides mccartyi by fluorescence in situ hybridization.

Matturro B, Rossetti S.

J Microbiol Methods. 2015 Mar;110:27-32. doi: 10.1016/j.mimet.2015.01.005. Epub 2015 Jan 14.

PMID:
25595619
8.

Oxygen effect on Dehalococcoides viability and biomarker quantification.

Amos BK, Ritalahti KM, Cruz-Garcia C, Padilla-Crespo E, Löffler FE.

Environ Sci Technol. 2008 Aug 1;42(15):5718-26.

PMID:
18754499
9.

DNA extraction-free quantification of Dehalococcoides spp. in groundwater using a hand-held device.

Stedtfeld RD, Stedtfeld TM, Kronlein M, Seyrig G, Steffan RJ, Cupples AM, Hashsham SA.

Environ Sci Technol. 2014 Dec 2;48(23):13855-63.

PMID:
25360694
10.

Correlation of Dehalococcoides 16S rRNA and chloroethene-reductive dehalogenase genes with geochemical conditions in chloroethene-contaminated groundwater.

van der Zaan B, Hannes F, Hoekstra N, Rijnaarts H, de Vos WM, Smidt H, Gerritse J.

Appl Environ Microbiol. 2010 Feb;76(3):843-50. doi: 10.1128/AEM.01482-09. Epub 2009 Dec 11.

11.

Chlorinated Electron Acceptor Abundance Drives Selection of Dehalococcoides mccartyi (D. mccartyi) Strains in Dechlorinating Enrichment Cultures and Groundwater Environments.

Pérez-de-Mora A, Lacourt A, McMaster ML, Liang X, Dworatzek SM, Edwards EA.

Front Microbiol. 2018 May 17;9:812. doi: 10.3389/fmicb.2018.00812. eCollection 2018.

12.

Concurrent ethene generation and growth of Dehalococcoides containing vinyl chloride reductive dehalogenase genes during an enhanced reductive dechlorination field demonstration.

Scheutz C, Durant ND, Dennis P, Hansen MH, Jørgensen T, Jakobsen R, Cox EE, Bjerg PL.

Environ Sci Technol. 2008 Dec 15;42(24):9302-9.

PMID:
19174908
13.

Monitoring abundance and expression of "Dehalococcoides" species chloroethene-reductive dehalogenases in a tetrachloroethene-dechlorinating flow column.

Behrens S, Azizian MF, McMurdie PJ, Sabalowsky A, Dolan ME, Semprini L, Spormann AM.

Appl Environ Microbiol. 2008 Sep;74(18):5695-703. doi: 10.1128/AEM.00926-08. Epub 2008 Aug 1.

14.

Identity and Substrate Specificity of Reductive Dehalogenases Expressed in Dehalococcoides-Containing Enrichment Cultures Maintained on Different Chlorinated Ethenes.

Liang X, Molenda O, Tang S, Edwards EA.

Appl Environ Microbiol. 2015 Jul;81(14):4626-33. doi: 10.1128/AEM.00536-15. Epub 2015 May 1.

15.

Reductive dehalogenase gene expression as a biomarker for physiological activity of Dehalococcoides spp.

Lee PK, Johnson DR, Holmes VF, He J, Alvarez-Cohen L.

Appl Environ Microbiol. 2006 Sep;72(9):6161-8.

16.

Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Yang Y, Higgins SA, Yan J, Şimşir B, Chourey K, Iyer R, Hettich RL, Baldwin B, Ogles DM, Löffler FE.

ISME J. 2017 Dec;11(12):2767-2780. doi: 10.1038/ismej.2017.127. Epub 2017 Aug 15.

17.
18.

Detection of Organohalide-Respiring Enzyme Biomarkers at a Bioaugmented TCE-Contaminated Field Site.

Heavner GLW, Mansfeldt CB, Wilkins MJ, Nicora CD, Debs GE, Edwards EA, Richardson RE.

Front Microbiol. 2019 Jun 27;10:1433. doi: 10.3389/fmicb.2019.01433. eCollection 2019.

19.

Normalized Quantitative PCR Measurements as Predictors for Ethene Formation at Sites Impacted with Chlorinated Ethenes.

Clark K, Taggart DM, Baldwin BR, Ritalahti KM, Murdoch RW, Hatt JK, Löffler FE.

Environ Sci Technol. 2018 Nov 20;52(22):13410-13420. doi: 10.1021/acs.est.8b04373. Epub 2018 Nov 8.

PMID:
30365883
20.

Chloroethene degradation and expression of Dehalococcoides dehalogenase genes in cultures originating from Yangtze sediments.

Kranzioch I, Ganz S, Tiehm A.

Environ Sci Pollut Res Int. 2015 Feb;22(4):3138-48. doi: 10.1007/s11356-014-3574-4. Epub 2014 Sep 20.

PMID:
25233916

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