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Items: 1 to 20 of 103

1.

Origins of De Novo Genes in Human and Chimpanzee.

Ruiz-Orera J, Hernandez-Rodriguez J, Chiva C, Sabidó E, Kondova I, Bontrop R, Marqués-Bonet T, Albà MM.

PLoS Genet. 2015 Dec 31;11(12):e1005721. doi: 10.1371/journal.pgen.1005721. eCollection 2015 Dec.

2.

Human-specific histone methylation signatures at transcription start sites in prefrontal neurons.

Shulha HP, Crisci JL, Reshetov D, Tushir JS, Cheung I, Bharadwaj R, Chou HJ, Houston IB, Peter CJ, Mitchell AC, Yao WD, Myers RH, Chen JF, Preuss TM, Rogaev EI, Jensen JD, Weng Z, Akbarian S.

PLoS Biol. 2012;10(11):e1001427. doi: 10.1371/journal.pbio.1001427. Epub 2012 Nov 20.

3.

Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.

Khaitovich P, Hellmann I, Enard W, Nowick K, Leinweber M, Franz H, Weiss G, Lachmann M, Pääbo S.

Science. 2005 Sep 16;309(5742):1850-4. Epub 2005 Sep 1.

4.

De Novo Genes Arise at a Slow but Steady Rate along the Primate Lineage and Have Been Subject to Incomplete Lineage Sorting.

Guerzoni D, McLysaght A.

Genome Biol Evol. 2016 Apr 25;8(4):1222-32. doi: 10.1093/gbe/evw074.

5.
6.

Non-random genomic divergence in repetitive sequences of human and chimpanzee in genes of different functional categories.

Shankar R, Chaurasia A, Ghosh B, Chekmenev D, Cheremushkin E, Kel A, Mukerji M.

Mol Genet Genomics. 2007 Apr;277(4):441-55. Epub 2007 Mar 9.

PMID:
17375324
7.

Promoter directionality is controlled by U1 snRNP and polyadenylation signals.

Almada AE, Wu X, Kriz AJ, Burge CB, Sharp PA.

Nature. 2013 Jul 18;499(7458):360-3. doi: 10.1038/nature12349. Epub 2013 Jun 23.

8.

De novo origin of VCY2 from autosome to Y-transposed amplicon.

Cao PR, Wang L, Jiang YC, Yi YS, Qu F, Liu TC, Lv Y.

PLoS One. 2015 Mar 23;10(3):e0119651. doi: 10.1371/journal.pone.0119651. eCollection 2015.

10.

[A comparative analysis of regulatory regions of the transthyretin gene in the mouse, human, and chimpanzee genomes].

Nadezhdin EV, Vinogradova TV, Sverdlov ED.

Bioorg Khim. 2004 Jul-Aug;30(4):383-8. Russian.

PMID:
15469012
11.

Evolution of DNAase I Hypersensitive Sites in MHC Regulatory Regions of Primates.

Jin Y, Gittelman RM, Lu Y, Liu X, Li MD, Ling F, Akey JM.

Genetics. 2018 Jun;209(2):579-589. doi: 10.1534/genetics.118.301028. Epub 2018 Apr 18.

12.

A genome-wide comparison of recent chimpanzee and human segmental duplications.

Cheng Z, Ventura M, She X, Khaitovich P, Graves T, Osoegawa K, Church D, DeJong P, Wilson RK, Pääbo S, Rocchi M, Eichler EE.

Nature. 2005 Sep 1;437(7055):88-93.

PMID:
16136132
13.

Evolutionary processes acting on candidate cis-regulatory regions in humans inferred from patterns of polymorphism and divergence.

Torgerson DG, Boyko AR, Hernandez RD, Indap A, Hu X, White TJ, Sninsky JJ, Cargill M, Adams MD, Bustamante CD, Clark AG.

PLoS Genet. 2009 Aug;5(8):e1000592. doi: 10.1371/journal.pgen.1000592. Epub 2009 Aug 7.

14.

High divergence in primate-specific duplicated regions: human and chimpanzee chorionic gonadotropin beta genes.

Hallast P, Saarela J, Palotie A, Laan M.

BMC Evol Biol. 2008 Jul 7;8:195. doi: 10.1186/1471-2148-8-195.

15.

Genome and gene alterations by insertions and deletions in the evolution of human and chimpanzee chromosome 22.

Volfovsky N, Oleksyk TK, Cruz KC, Truelove AL, Stephens RM, Smith MW.

BMC Genomics. 2009 Jan 26;10:51. doi: 10.1186/1471-2164-10-51.

16.

Hominoid-specific de novo protein-coding genes originating from long non-coding RNAs.

Xie C, Zhang YE, Chen JY, Liu CJ, Zhou WZ, Li Y, Zhang M, Zhang R, Wei L, Li CY.

PLoS Genet. 2012 Sep;8(9):e1002942. doi: 10.1371/journal.pgen.1002942. Epub 2012 Sep 13.

17.

Intergenic and repeat transcription in human, chimpanzee and macaque brains measured by RNA-Seq.

Xu AG, He L, Li Z, Xu Y, Li M, Fu X, Yan Z, Yuan Y, Menzel C, Li N, Somel M, Hu H, Chen W, Pääbo S, Khaitovich P.

PLoS Comput Biol. 2010 Jul 1;6:e1000843. doi: 10.1371/journal.pcbi.1000843.

18.

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee C.

Genome Biol. 2011;12(5):R52. doi: 10.1186/gb-2011-12-5-r52. Epub 2011 May 31.

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20.

Comparative integromics on BMP/GDF family.

Katoh Y, Katoh M.

Int J Mol Med. 2006 May;17(5):951-5.

PMID:
16596286

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