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Items: 1 to 20 of 101

1.

Exploring the repeat protein universe through computational protein design.

Brunette TJ, Parmeggiani F, Huang PS, Bhabha G, Ekiert DC, Tsutakawa SE, Hura GL, Tainer JA, Baker D.

Nature. 2015 Dec 24;528(7583):580-4. doi: 10.1038/nature16162. Epub 2015 Dec 16.

2.

Rational design of α-helical tandem repeat proteins with closed architectures.

Doyle L, Hallinan J, Bolduc J, Parmeggiani F, Baker D, Stoddard BL, Bradley P.

Nature. 2015 Dec 24;528(7583):585-8. doi: 10.1038/nature16191. Epub 2015 Dec 16.

3.

A general computational approach for repeat protein design.

Parmeggiani F, Huang PS, Vorobiev S, Xiao R, Park K, Caprari S, Su M, Seetharaman J, Mao L, Janjua H, Montelione GT, Hunt J, Baker D.

J Mol Biol. 2015 Jan 30;427(2):563-75. doi: 10.1016/j.jmb.2014.11.005. Epub 2014 Nov 14.

4.

Design of a novel globular protein fold with atomic-level accuracy.

Kuhlman B, Dantas G, Ireton GC, Varani G, Stoddard BL, Baker D.

Science. 2003 Nov 21;302(5649):1364-8.

5.

Modulating repeat protein stability: the effect of individual helix stability on the collective behavior of the ensemble.

Cortajarena AL, Mochrie SG, Regan L.

Protein Sci. 2011 Jun;20(6):1042-7. doi: 10.1002/pro.638. Epub 2011 May 3.

6.

Exploring the folding energy landscape of a series of designed consensus tetratricopeptide repeat proteins.

Javadi Y, Main ER.

Proc Natl Acad Sci U S A. 2009 Oct 13;106(41):17383-8. doi: 10.1073/pnas.0907455106. Epub 2009 Oct 1. Erratum in: Proc Natl Acad Sci U S A. 2009 Nov 10;106(45):19204.

7.

Synthetic beta-solenoid proteins with the fragment-free computational design of a beta-hairpin extension.

MacDonald JT, Kabasakal BV, Godding D, Kraatz S, Henderson L, Barber J, Freemont PS, Murray JW.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10346-51. doi: 10.1073/pnas.1525308113. Epub 2016 Aug 29.

8.

Consensus-derived structural determinants of the ankyrin repeat motif.

Mosavi LK, Minor DL Jr, Peng ZY.

Proc Natl Acad Sci U S A. 2002 Dec 10;99(25):16029-34. Epub 2002 Dec 2.

9.

Design, production and molecular structure of a new family of artificial alpha-helicoidal repeat proteins (αRep) based on thermostable HEAT-like repeats.

Urvoas A, Guellouz A, Valerio-Lepiniec M, Graille M, Durand D, Desravines DC, van Tilbeurgh H, Desmadril M, Minard P.

J Mol Biol. 2010 Nov 26;404(2):307-27. doi: 10.1016/j.jmb.2010.09.048. Epub 2010 Sep 29.

PMID:
20887736
10.

Context-Dependent Energetics of Loop Extensions in a Family of Tandem-Repeat Proteins.

Perez-Riba A, Lowe AR, Main ERG, Itzhaki LS.

Biophys J. 2018 Jun 5;114(11):2552-2562. doi: 10.1016/j.bpj.2018.03.038.

11.

Dissecting and reprogramming the folding and assembly of tandem-repeat proteins.

Rowling PJ, Sivertsson EM, Perez-Riba A, Main ER, Itzhaki LS.

Biochem Soc Trans. 2015 Oct;43(5):881-8. doi: 10.1042/BST20150099. Review.

PMID:
26517898
12.

Characterizing the existing and potential structural space of proteins by large-scale multiple loop permutations.

Dai L, Zhou Y.

J Mol Biol. 2011 May 6;408(3):585-95. doi: 10.1016/j.jmb.2011.02.056. Epub 2011 Mar 2.

13.

Principles for designing ideal protein structures.

Koga N, Tatsumi-Koga R, Liu G, Xiao R, Acton TB, Montelione GT, Baker D.

Nature. 2012 Nov 8;491(7423):222-7. doi: 10.1038/nature11600.

14.

Local and long-range stability in tandemly arrayed tetratricopeptide repeats.

Main ER, Stott K, Jackson SE, Regan L.

Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5721-6. Epub 2005 Apr 11.

15.

Calorimetric study of a series of designed repeat proteins: modular structure and modular folding.

Cortajarena AL, Regan L.

Protein Sci. 2011 Feb;20(2):336-40. doi: 10.1002/pro.564.

16.

Computer-based redesign of a beta sandwich protein suggests that extensive negative design is not required for de novo beta sheet design.

Hu X, Wang H, Ke H, Kuhlman B.

Structure. 2008 Dec 10;16(12):1799-805. doi: 10.1016/j.str.2008.09.013.

17.
18.

Structure-based optimization of designed Armadillo-repeat proteins.

Madhurantakam C, Varadamsetty G, Grütter MG, Plückthun A, Mittl PR.

Protein Sci. 2012 Jul;21(7):1015-28. doi: 10.1002/pro.2085. Epub 2012 May 24.

19.

De novo design of a four-fold symmetric TIM-barrel protein with atomic-level accuracy.

Huang PS, Feldmeier K, Parmeggiani F, Velasco DAF, Höcker B, Baker D.

Nat Chem Biol. 2016 Jan;12(1):29-34. doi: 10.1038/nchembio.1966. Epub 2015 Nov 23.

20.

Computational design of a protein crystal.

Lanci CJ, MacDermaid CM, Kang SG, Acharya R, North B, Yang X, Qiu XJ, DeGrado WF, Saven JG.

Proc Natl Acad Sci U S A. 2012 May 8;109(19):7304-9. doi: 10.1073/pnas.1112595109. Epub 2012 Apr 25.

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