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Items: 1 to 20 of 160

1.

Immunoinformatics and epitope prediction in the age of genomic medicine.

Backert L, Kohlbacher O.

Genome Med. 2015 Nov 20;7:119. doi: 10.1186/s13073-015-0245-0. Review.

2.

Mapping the tumour human leukocyte antigen (HLA) ligandome by mass spectrometry.

Freudenmann LK, Marcu A, Stevanović S.

Immunology. 2018 Jul;154(3):331-345. doi: 10.1111/imm.12936. Epub 2018 May 8. Review.

3.

Evaluation of MHC-II peptide binding prediction servers: applications for vaccine research.

Lin HH, Zhang GL, Tongchusak S, Reinherz EL, Brusic V.

BMC Bioinformatics. 2008 Dec 12;9 Suppl 12:S22. doi: 10.1186/1471-2105-9-S12-S22.

4.

HLA-HD: An accurate HLA typing algorithm for next-generation sequencing data.

Kawaguchi S, Higasa K, Shimizu M, Yamada R, Matsuda F.

Hum Mutat. 2017 Jul;38(7):788-797. doi: 10.1002/humu.23230. Epub 2017 May 12.

PMID:
28419628
5.

Prediction of antibody structural epitopes via random peptide library screening and next generation sequencing.

Ibsen KN, Daugherty PS.

J Immunol Methods. 2017 Dec;451:28-36. doi: 10.1016/j.jim.2017.08.004. Epub 2017 Aug 18.

6.

Computational Methods for Identification of T Cell Neoepitopes in Tumors.

Jurtz VI, Olsen LR.

Methods Mol Biol. 2019;1878:157-172. doi: 10.1007/978-1-4939-8868-6_9.

PMID:
30378075
7.

Epitope distribution in ordered and disordered protein regions - part A. T-cell epitope frequency, affinity and hydropathy.

Mitić NS, Pavlović MD, Jandrlić DR.

J Immunol Methods. 2014 Apr;406:83-103. doi: 10.1016/j.jim.2014.02.012. Epub 2014 Mar 12.

PMID:
24614036
8.

Comparison of experimental fine-mapping to in silico prediction results of HIV-1 epitopes reveals ongoing need for mapping experiments.

Roider J, Meissner T, Kraut F, Vollbrecht T, Stirner R, Bogner JR, Draenert R.

Immunology. 2014 Oct;143(2):193-201. doi: 10.1111/imm.12301.

9.

An Introduction to Epitope Mapping.

Nilvebrant J, Rockberg J.

Methods Mol Biol. 2018;1785:1-10. doi: 10.1007/978-1-4939-7841-0_1.

PMID:
29714008
10.

Genomic analysis of 63,220 tumors reveals insights into tumor uniqueness and targeted cancer immunotherapy strategies.

Hartmaier RJ, Charo J, Fabrizio D, Goldberg ME, Albacker LA, Pao W, Chmielecki J.

Genome Med. 2017 Feb 24;9(1):16. doi: 10.1186/s13073-017-0408-2.

11.

Next generation sequencing: implications in personalized medicine and pharmacogenomics.

Rabbani B, Nakaoka H, Akhondzadeh S, Tekin M, Mahdieh N.

Mol Biosyst. 2016 May 24;12(6):1818-30. doi: 10.1039/c6mb00115g. Review.

PMID:
27066891
12.

Discovery of promiscuous HLA-II-restricted T cell epitopes with TEPITOPE.

Bian H, Hammer J.

Methods. 2004 Dec;34(4):468-75.

PMID:
15542373
13.

An Introduction to B-Cell Epitope Mapping and In Silico Epitope Prediction.

Potocnakova L, Bhide M, Pulzova LB.

J Immunol Res. 2016;2016:6760830. doi: 10.1155/2016/6760830. Epub 2016 Dec 29. Review.

14.

The impact of next-generation sequencing technologies on HLA research.

Hosomichi K, Shiina T, Tajima A, Inoue I.

J Hum Genet. 2015 Nov;60(11):665-73. doi: 10.1038/jhg.2015.102. Epub 2015 Aug 27. Review.

15.

Genomic medicine and risk prediction across the disease spectrum.

Kotze MJ, Lückhoff HK, Peeters AV, Baatjes K, Schoeman M, van der Merwe L, Grant KA, Fisher LR, van der Merwe N, Pretorius J, van Velden DP, Myburgh EJ, Pienaar FM, van Rensburg SJ, Yako YY, September AV, Moremi KE, Cronje FJ, Tiffin N, Bouwens CS, Bezuidenhout J, Apffelstaedt JP, Hough FS, Erasmus RT, Schneider JW.

Crit Rev Clin Lab Sci. 2015;52(3):120-37. doi: 10.3109/10408363.2014.997930. Epub 2015 Jan 19. Review.

PMID:
25597499
16.

iVAX: An integrated toolkit for the selection and optimization of antigens and the design of epitope-driven vaccines.

Moise L, Gutierrez A, Kibria F, Martin R, Tassone R, Liu R, Terry F, Martin B, De Groot AS.

Hum Vaccin Immunother. 2015;11(9):2312-21. doi: 10.1080/21645515.2015.1061159.

17.

ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data.

Hayashi S, Yamaguchi R, Mizuno S, Komura M, Miyano S, Nakagawa H, Imoto S.

BMC Genomics. 2018 Nov 1;19(1):790. doi: 10.1186/s12864-018-5169-9.

18.

Clinical Genomics: Challenges and Opportunities.

Vijay P, McIntyre AB, Mason CE, Greenfield JP, Li S.

Crit Rev Eukaryot Gene Expr. 2016;26(2):97-113. doi: 10.1615/CritRevEukaryotGeneExpr.2016015724. Review.

19.

Epitope-driven DNA vaccine design employing immunoinformatics against B-cell lymphoma: a biotech's challenge.

Iurescia S, Fioretti D, Fazio VM, Rinaldi M.

Biotechnol Adv. 2012 Jan-Feb;30(1):372-83. doi: 10.1016/j.biotechadv.2011.06.020. Epub 2011 Jul 2. Review.

PMID:
21745560
20.

An Overview of DNA Analytical Methods.

Arboleda VA, Xian RR.

Methods Mol Biol. 2019;1897:385-402. doi: 10.1007/978-1-4939-8935-5_31. Review.

PMID:
30539459

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