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Items: 1 to 20 of 214

1.

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8.

2.

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.

Pruitt KD, Tatusova T, Brown GR, Maglott DR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D130-5. doi: 10.1093/nar/gkr1079. Epub 2011 Nov 24.

3.

NCBI Reference Sequences: current status, policy and new initiatives.

Pruitt KD, Tatusova T, Klimke W, Maglott DR.

Nucleic Acids Res. 2009 Jan;37(Database issue):D32-6. doi: 10.1093/nar/gkn721. Epub 2008 Oct 16.

4.

RefSeq: an update on mammalian reference sequences.

Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Shkeda A, Sun H, Tamez P, Tully RE, Wallin C, Webb D, Weber J, Wu W, DiCuccio M, Kitts P, Maglott DR, Murphy TD, Ostell JM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63. doi: 10.1093/nar/gkt1114. Epub 2013 Nov 19.

5.

NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D501-4.

6.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.

7.

NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2007 Jan;35(Database issue):D61-5. Epub 2006 Nov 27.

8.

RefSeq microbial genomes database: new representation and annotation strategy.

Tatusova T, Ciufo S, Fedorov B, O'Neill K, Tolstoy I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D553-9. doi: 10.1093/nar/gkt1274. Epub 2013 Dec 6. Erratum in: Nucleic Acids Res. 2015 Apr 20;43(7):3872.

9.

Mouse genome annotation by the RefSeq project.

McGarvey KM, Goldfarb T, Cox E, Farrell CM, Gupta T, Joardar VS, Kodali VK, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Webb D, Wright MW, Murphy TD, Pruitt KD.

Mamm Genome. 2015 Oct;26(9-10):379-90. doi: 10.1007/s00335-015-9585-8. Epub 2015 Jul 28.

10.

RefSeq: an update on prokaryotic genome annotation and curation.

Haft DH, DiCuccio M, Badretdin A, Brover V, Chetvernin V, O'Neill K, Li W, Chitsaz F, Derbyshire MK, Gonzales NR, Gwadz M, Lu F, Marchler GH, Song JS, Thanki N, Yamashita RA, Zheng C, Thibaud-Nissen F, Geer LY, Marchler-Bauer A, Pruitt KD.

Nucleic Acids Res. 2018 Jan 4;46(D1):D851-D860. doi: 10.1093/nar/gkx1068.

11.

Gene: a gene-centered information resource at NCBI.

Brown GR, Hem V, Katz KS, Ovetsky M, Wallin C, Ermolaeva O, Tolstoy I, Tatusova T, Pruitt KD, Maglott DR, Murphy TD.

Nucleic Acids Res. 2015 Jan;43(Database issue):D36-42. doi: 10.1093/nar/gku1055. Epub 2014 Oct 29.

12.

NCBI Reference Sequence project: update and current status.

Pruitt KD, Tatusova T, Maglott DR.

Nucleic Acids Res. 2003 Jan 1;31(1):34-7.

13.

Update on RefSeq microbial genomes resources.

Tatusova T, Ciufo S, Federhen S, Fedorov B, McVeigh R, O'Neill K, Tolstoy I, Zaslavsky L.

Nucleic Acids Res. 2015 Jan;43(Database issue):D599-605. doi: 10.1093/nar/gku1062. Epub 2014 Dec 15.

15.

Entrez Gene: gene-centered information at NCBI.

Maglott D, Ostell J, Pruitt KD, Tatusova T.

Nucleic Acids Res. 2011 Jan;39(Database issue):D52-7. doi: 10.1093/nar/gkq1237. Epub 2010 Nov 28.

16.

Tracking and coordinating an international curation effort for the CCDS Project.

Harte RA, Farrell CM, Loveland JE, Suner MM, Wilming L, Aken B, Barrell D, Frankish A, Wallin C, Searle S, Diekhans M, Harrow J, Pruitt KD.

Database (Oxford). 2012 Mar 20;2012:bas008. doi: 10.1093/database/bas008. Print 2012.

17.

RefSeq curation and annotation of antizyme and antizyme inhibitor genes in vertebrates.

Rajput B, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2015 Sep 3;43(15):7270-9. doi: 10.1093/nar/gkv713. Epub 2015 Jul 13.

18.

Type material in the NCBI Taxonomy Database.

Federhen S.

Nucleic Acids Res. 2015 Jan;43(Database issue):D1086-98. doi: 10.1093/nar/gku1127. Epub 2014 Nov 14.

19.

Curation of viral genomes: challenges, applications and the way forward.

Kulkarni-Kale U, Bhosle SG, Manjari GS, Joshi M, Bansode S, Kolaskar AS.

BMC Bioinformatics. 2006 Dec 18;7 Suppl 5:S12.

20.

Entrez Gene: gene-centered information at NCBI.

Maglott D, Ostell J, Pruitt KD, Tatusova T.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D54-8. Update in: Nucleic Acids Res. 2007 Jan;35(Database issue):D26-31.

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