Similar articles for PMID: 26510298

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1

A new approach for detecting fungal and oomycete plant pathogens in next generation sequencing metagenome data utilising electronic probes.

Espindola A, Schneider W, Hoyt PR, Marek SM, Garzon C. Espindola A, et al. Int J Data Min Bioinform. 2015;12(2):115-28. doi: 10.1504/ijdmb.2015.069422. Int J Data Min Bioinform. 2015. PMID: 26510298

2

E-probe Diagnostic Nucleic acid Analysis (EDNA): a theoretical approach for handling of next generation sequencing data for diagnostics.

Stobbe AH, Daniels J, Espindola AS, Verma R, Melcher U, Ochoa-Corona F, Garzon C, Fletcher J, Schneider W. Stobbe AH, et al. J Microbiol Methods. 2013 Sep;94(3):356-66. doi: 10.1016/j.mimet.2013.07.002. Epub 2013 Jul 16. J Microbiol Methods. 2013. PMID: 23867249

3

Relative Performance of MinION (Oxford Nanopore Technologies) versus Sequel (Pacific Biosciences) Third-Generation Sequencing Instruments in Identification of Agricultural and Forest Fungal Pathogens.

Loit K, Adamson K, Bahram M, Puusepp R, Anslan S, Kiiker R, Drenkhan R, Tedersoo L. Loit K, et al. Appl Environ Microbiol. 2019 Oct 16;85(21):e01368-19. doi: 10.1128/AEM.01368-19. Print 2019 Nov 1. Appl Environ Microbiol. 2019. PMID: 31444199 Free PMC article.

4

Screening metagenomic data for viruses using the e-probe diagnostic nucleic acid assay.

Stobbe AH, Schneider WL, Hoyt PR, Melcher U. Stobbe AH, et al. Phytopathology. 2014 Oct;104(10):1125-9. doi: 10.1094/PHYTO-11-13-0310-R. Phytopathology. 2014. PMID: 25207481 Free article.

5

A domain-centric analysis of oomycete plant pathogen genomes reveals unique protein organization.

Seidl MF, Van den Ackerveken G, Govers F, Snel B. Seidl MF, et al. Plant Physiol. 2011 Feb;155(2):628-44. doi: 10.1104/pp.110.167841. Epub 2010 Nov 30. Plant Physiol. 2011. PMID: 21119047 Free PMC article.

6

The two-speed genomes of filamentous pathogens: waltz with plants.

Dong S, Raffaele S, Kamoun S. Dong S, et al. Curr Opin Genet Dev. 2015 Dec;35:57-65. doi: 10.1016/j.gde.2015.09.001. Epub 2015 Nov 3. Curr Opin Genet Dev. 2015. PMID: 26451981 Review.

7

DNA barcoding of phytopathogens for disease diagnostics and bio-surveillance.

Choudhary P, Singh BN, Chakdar H, Saxena AK. Choudhary P, et al. World J Microbiol Biotechnol. 2021 Feb 19;37(3):54. doi: 10.1007/s11274-021-03019-0. World J Microbiol Biotechnol. 2021. PMID: 33604719 Review.

8

Insights from sequencing fungal and oomycete genomes: what can we learn about plant disease and the evolution of pathogenicity?

Soanes DM, Richards TA, Talbot NJ. Soanes DM, et al. Plant Cell. 2007 Nov;19(11):3318-26. doi: 10.1105/tpc.107.056663. Epub 2007 Nov 16. Plant Cell. 2007. PMID: 18024565 Free PMC article. No abstract available.

9

An improved high throughput sequencing method for studying oomycete communities.

Sapkota R, Nicolaisen M. Sapkota R, et al. J Microbiol Methods. 2015 Mar;110:33-9. doi: 10.1016/j.mimet.2015.01.013. Epub 2015 Jan 17. J Microbiol Methods. 2015. PMID: 25602160

10

Population Genomics of Fungal and Oomycete Pathogens.

Grünwald NJ, McDonald BA, Milgroom MG. Grünwald NJ, et al. Annu Rev Phytopathol. 2016 Aug 4;54:323-46. doi: 10.1146/annurev-phyto-080614-115913. Epub 2016 Jan 8. Annu Rev Phytopathol. 2016. PMID: 27296138 Review.

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