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Items: 1 to 20 of 101

1.

Minimum Information about a Biosynthetic Gene cluster.

Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, Garg N, Geiger C, Gomez-Escribano JP, Greule A, Hadjithomas M, Haines AS, Helfrich EJ, Hillwig ML, Ishida K, Jones AC, Jones CS, Jungmann K, Kegler C, Kim HU, Kötter P, Krug D, Masschelein J, Melnik AV, Mantovani SM, Monroe EA, Moore M, Moss N, Nützmann HW, Pan G, Pati A, Petras D, Reen FJ, Rosconi F, Rui Z, Tian Z, Tobias NJ, Tsunematsu Y, Wiemann P, Wyckoff E, Yan X, Yim G, Yu F, Xie Y, Aigle B, Apel AK, Balibar CJ, Balskus EP, Barona-Gómez F, Bechthold A, Bode HB, Borriss R, Brady SF, Brakhage AA, Caffrey P, Cheng YQ, Clardy J, Cox RJ, De Mot R, Donadio S, Donia MS, van der Donk WA, Dorrestein PC, Doyle S, Driessen AJ, Ehling-Schulz M, Entian KD, Fischbach MA, Gerwick L, Gerwick WH, Gross H, Gust B, Hertweck C, Höfte M, Jensen SE, Ju J, Katz L, Kaysser L, Klassen JL, Keller NP, Kormanec J, Kuipers OP, Kuzuyama T, Kyrpides NC, Kwon HJ, Lautru S, Lavigne R, Lee CY, Linquan B, Liu X, Liu W, Luzhetskyy A, Mahmud T, Mast Y, Méndez C, Metsä-Ketelä M, Micklefield J, Mitchell DA, Moore BS, Moreira LM, Müller R, Neilan BA, Nett M, Nielsen J, O'Gara F, Oikawa H, Osbourn A, Osburne MS, Ostash B, Payne SM, Pernodet JL, Petricek M, Piel J, Ploux O, Raaijmakers JM, Salas JA, Schmitt EK, Scott B, Seipke RF, Shen B, Sherman DH, Sivonen K, Smanski MJ, Sosio M, Stegmann E, Süssmuth RD, Tahlan K, Thomas CM, Tang Y, Truman AW, Viaud M, Walton JD, Walsh CT, Weber T, van Wezel GP, Wilkinson B, Willey JM, Wohlleben W, Wright GD, Ziemert N, Zhang C, Zotchev SB, Breitling R, Takano E, Glöckner FO.

Nat Chem Biol. 2015 Sep;11(9):625-31. doi: 10.1038/nchembio.1890. No abstract available.

2.

Computational approaches to natural product discovery.

Medema MH, Fischbach MA.

Nat Chem Biol. 2015 Sep;11(9):639-48. doi: 10.1038/nchembio.1884.

3.

The Use of ClusterMine360 for the Analysis of Polyketide and Nonribosomal Peptide Biosynthetic Pathways.

Tremblay N, Hill P, Conway KR, Boddy CN.

Methods Mol Biol. 2016;1401:233-52. doi: 10.1007/978-1-4939-3375-4_15.

PMID:
26831712
4.

Pathway and Gene Discovery from Natural Hosts and Organisms.

Ke J, Yoshikuni Y.

Methods Mol Biol. 2019;1927:1-9. doi: 10.1007/978-1-4939-9142-6_1.

PMID:
30788781
5.

Comprehensive curation and analysis of fungal biosynthetic gene clusters of published natural products.

Li YF, Tsai KJS, Harvey CJB, Li JJ, Ary BE, Berlew EE, Boehman BL, Findley DM, Friant AG, Gardner CA, Gould MP, Ha JH, Lilley BK, McKinstry EL, Nawal S, Parry RC, Rothchild KW, Silbert SD, Tentilucci MD, Thurston AM, Wai RB, Yoon Y, Aiyar RS, Medema MH, Hillenmeyer ME, Charkoudian LK.

Fungal Genet Biol. 2016 Apr;89:18-28. doi: 10.1016/j.fgb.2016.01.012. Epub 2016 Jan 22.

6.

Natural product biosynthesis by microorganisms and plants, Part A. Preface.

Hopwood DA.

Methods Enzymol. 2012;515:xv-xx. doi: 10.1016/B978-0-12-394290-6.09989-4. No abstract available.

PMID:
22999183
7.

Engineering Plant Secondary Metabolism in Microbial Systems.

Pyne ME, Narcross L, Martin VJJ.

Plant Physiol. 2019 Mar;179(3):844-861. doi: 10.1104/pp.18.01291. Epub 2019 Jan 14. No abstract available.

8.

Microbial production of small medicinal molecules and biologics: From nature to synthetic pathways.

Zhang R, Li C, Wang J, Yang Y, Yan Y.

Biotechnol Adv. 2018 Dec;36(8):2219-2231. doi: 10.1016/j.biotechadv.2018.10.009. Epub 2018 Oct 29. Review.

PMID:
30385278
9.

Biosynthesis of bioactive natural products from Basidiomycota.

Lin HC, Hewage RT, Lu YC, Chooi YH.

Org Biomol Chem. 2019 Jan 31;17(5):1027-1036. doi: 10.1039/c8ob02774a. Review.

PMID:
30608100
10.

Biosynthetic Insights of Calyculin- and Misakinolide-Type Compounds in "Candidatus Entotheonella sp."

Uria AR, Piel J, Wakimoto T.

Methods Enzymol. 2018;604:287-330. doi: 10.1016/bs.mie.2018.02.017. Epub 2018 May 7.

PMID:
29779656
11.

Polyketide and nonribosomal peptide retro-biosynthesis and global gene cluster matching.

Dejong CA, Chen GM, Li H, Johnston CW, Edwards MR, Rees PN, Skinnider MA, Webster AL, Magarvey NA.

Nat Chem Biol. 2016 Dec;12(12):1007-1014. doi: 10.1038/nchembio.2188. Epub 2016 Oct 3.

PMID:
27694801
12.

Detecting and prioritizing biosynthetic gene clusters for bioactive compounds in bacteria and fungi.

Tran PN, Yen MR, Chiang CY, Lin HC, Chen PY.

Appl Microbiol Biotechnol. 2019 Apr;103(8):3277-3287. doi: 10.1007/s00253-019-09708-z. Epub 2019 Mar 12. Review.

13.

Bioinformatics tools for the identification of gene clusters that biosynthesize specialized metabolites.

Chavali AK, Rhee SY.

Brief Bioinform. 2018 Sep 28;19(5):1022-1034. doi: 10.1093/bib/bbx020. Review.

14.

The role of transcription in heterologous expression of polyketides in bacterial hosts.

Stevens DC, Hari TP, Boddy CN.

Nat Prod Rep. 2013 Oct 11;30(11):1391-411. doi: 10.1039/c3np70060g. Review.

PMID:
24061690
15.

The biosynthesis of C5-C25 terpenoid compounds.

Dewick PM.

Nat Prod Rep. 2002 Apr;19(2):181-222. Review.

PMID:
12013278
16.

Surveys of non-ribosomal peptide and polyketide assembly lines in fungi and prospects for their analysis in vitro and in vivo.

Evans BS, Robinson SJ, Kelleher NL.

Fungal Genet Biol. 2011 Jan;48(1):49-61. doi: 10.1016/j.fgb.2010.06.012. Epub 2010 Jun 30. Review.

17.

The biosynthesis of plant alkaloids and nitrogenous microbial metabolites.

Herbert RB.

Nat Prod Rep. 2001 Feb;18(1):50-65. Review. No abstract available.

PMID:
11245400
18.

Engineering microbial cells for the biosynthesis of natural compounds of pharmaceutical significance.

Jeandet P, Vasserot Y, Chastang T, Courot E.

Biomed Res Int. 2013;2013:780145. doi: 10.1155/2013/780145. Epub 2013 Apr 27.

19.

Unrivalled diversity: the many roles and reactions of bacterial cytochromes P450 in secondary metabolism.

Greule A, Stok JE, De Voss JJ, Cryle MJ.

Nat Prod Rep. 2018 Aug 15;35(8):757-791. doi: 10.1039/c7np00063d. Review.

PMID:
29667657
20.

Gibberellin biosynthesis and metabolism: A convergent route for plants, fungi and bacteria.

Salazar-Cerezo S, Martínez-Montiel N, García-Sánchez J, Pérez-Y-Terrón R, Martínez-Contreras RD.

Microbiol Res. 2018 Mar;208:85-98. doi: 10.1016/j.micres.2018.01.010. Epub 2018 Feb 3. Review.

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