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698[uid]

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In the pursuit of a semantic similarity metric based on UMLS annotations for articles in PubMed Central Open Access.

Garcia Castro LJ, Berlanga R, Garcia A. Garcia Castro LJ, et al. J Biomed Inform. 2015 Oct;57:204-18. doi: 10.1016/j.jbi.2015.07.015. Epub 2015 Aug 1. J Biomed Inform. 2015. PMID: 26241356 Free article.

Corpus domain effects on distributional semantic modeling of medical terms.

Pakhomov SV, Finley G, McEwan R, Wang Y, Melton GB. Pakhomov SV, et al. Bioinformatics. 2016 Dec 1;32(23):3635-3644. doi: 10.1093/bioinformatics/btw529. Epub 2016 Aug 16. Bioinformatics. 2016. PMID: 27531100 Free PMC article.

pyMeSHSim: an integrative python package for biomedical named entity recognition, normalization, and comparison of MeSH terms.

Luo ZH, Shi MW, Yang Z, Zhang HY, Chen ZX. Luo ZH, et al. BMC Bioinformatics. 2020 Jun 18;21(1):252. doi: 10.1186/s12859-020-03583-6. BMC Bioinformatics. 2020. PMID: 32552728 Free PMC article.

Textpresso: an ontology-based information retrieval and extraction system for biological literature.

Müller HM, Kenny EE, Sternberg PW. Müller HM, et al. PLoS Biol. 2004 Nov;2(11):e309. doi: 10.1371/journal.pbio.0020309. Epub 2004 Sep 21. PLoS Biol. 2004. PMID: 15383839 Free PMC article.

Assessment of disease named entity recognition on a corpus of annotated sentences.

Jimeno A, Jimenez-Ruiz E, Lee V, Gaudan S, Berlanga R, Rebholz-Schuhmann D. Jimeno A, et al. BMC Bioinformatics. 2008 Apr 11;9 Suppl 3(Suppl 3):S3. doi: 10.1186/1471-2105-9-S3-S3. BMC Bioinformatics. 2008. PMID: 18426548 Free PMC article.

Zhu Y, Yan E, Wang F. Zhu Y, et al. BMC Med Inform Decis Mak. 2017 Jul 3;17(1):95. doi: 10.1186/s12911-017-0498-1. BMC Med Inform Decis Mak. 2017. PMID: 28673289 Free PMC article.

SemBioNLQA: A semantic biomedical question answering system for retrieving exact and ideal answers to natural language questions.

Sarrouti M, Ouatik El Alaoui S. Sarrouti M, et al. Artif Intell Med. 2020 Jan;102:101767. doi: 10.1016/j.artmed.2019.101767. Epub 2019 Nov 28. Artif Intell Med. 2020. PMID: 31980104

UMLS-Interface and UMLS-Similarity : open source software for measuring paths and semantic similarity.

McInnes BT, Pedersen T, Pakhomov SV. McInnes BT, et al. AMIA Annu Symp Proc. 2009 Nov 14;2009:431-5. AMIA Annu Symp Proc. 2009. PMID: 20351894 Free PMC article.

A comparison of word embeddings for the biomedical natural language processing.

Wang Y, Liu S, Afzal N, Rastegar-Mojarad M, Wang L, Shen F, Kingsbury P, Liu H. Wang Y, et al. J Biomed Inform. 2018 Nov;87:12-20. doi: 10.1016/j.jbi.2018.09.008. Epub 2018 Sep 12. J Biomed Inform. 2018. PMID: 30217670 Free PMC article.

Using ontology-based semantic similarity to facilitate the article screening process for systematic reviews.

Ji X, Ritter A, Yen PY. Ji X, et al. J Biomed Inform. 2017 May;69:33-42. doi: 10.1016/j.jbi.2017.03.007. Epub 2017 Mar 14. J Biomed Inform. 2017. PMID: 28302519 Free article.

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