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Transcriptome analysis of bacteriophage communities in periodontal health and disease.

Santiago-Rodriguez TM, Naidu M, Abeles SR, Boehm TK, Ly M, Pride DT.

BMC Genomics. 2015 Jul 28;16:549. doi: 10.1186/s12864-015-1781-0.


Altered oral viral ecology in association with periodontal disease.

Ly M, Abeles SR, Boehm TK, Robles-Sikisaka R, Naidu M, Santiago-Rodriguez T, Pride DT.

MBio. 2014 May 20;5(3):e01133-14. doi: 10.1128/mBio.01133-14.


The role of bacteriophages in periodontal health and disease.

Pinto G, Silva MD, Peddey M, Sillankorva S, Azeredo J.

Future Microbiol. 2016 Oct;11:1359-1369. Epub 2016 Sep 16. Review.


Phage-bacteria interaction network in human oral microbiome.

Wang J, Gao Y, Zhao F.

Environ Microbiol. 2016 Jul;18(7):2143-58. doi: 10.1111/1462-2920.12923. Epub 2015 Jul 21.


Transcriptomic analysis of Shiga-toxigenic bacteriophage carriage reveals a profound regulatory effect on acid resistance in Escherichia coli.

Veses-Garcia M, Liu X, Rigden DJ, Kenny JG, McCarthy AJ, Allison HE.

Appl Environ Microbiol. 2015 Dec;81(23):8118-25. doi: 10.1128/AEM.02034-15. Epub 2015 Sep 18.


Global transcription of CRISPR loci in the human oral cavity.

Lum AG, Ly M, Santiago-Rodriguez TM, Naidu M, Boehm TK, Pride DT.

BMC Genomics. 2015 May 21;16:401. doi: 10.1186/s12864-015-1615-0.


Bacteriophages of the Urinary Microbiome.

Miller-Ensminger T, Garretto A, Brenner J, Thomas-White K, Zambom A, Wolfe AJ, Putonti C.

J Bacteriol. 2018 Mar 12;200(7). pii: e00738-17. doi: 10.1128/JB.00738-17. Print 2018 Apr 1.


Bacteriophage and their potential roles in the human oral cavity.

Edlund A, Santiago-Rodriguez TM, Boehm TK, Pride DT.

J Oral Microbiol. 2015 Apr 9;7:27423. doi: 10.3402/jom.v7.27423. eCollection 2015.


The use of bacteriophages to biocontrol oral biofilms.

SzafraƄski SP, Winkel A, Stiesch M.

J Biotechnol. 2017 May 20;250:29-44. doi: 10.1016/j.jbiotec.2017.01.002. Epub 2017 Jan 17. Review.


The Human Gut Phage Community and Its Implications for Health and Disease.

Manrique P, Dills M, Young MJ.

Viruses. 2017 Jun 8;9(6). pii: E141. doi: 10.3390/v9060141. Review.


Diversity of phage infection types and associated terminology: the problem with 'Lytic or lysogenic'.

Hobbs Z, Abedon ST.

FEMS Microbiol Lett. 2016 Apr;363(7). pii: fnw047. doi: 10.1093/femsle/fnw047. Epub 2016 Feb 29. Review.


Chemostat culture systems support diverse bacteriophage communities from human feces.

Santiago-Rodriguez TM, Ly M, Daigneault MC, Brown IH, McDonald JA, Bonilla N, Vercoe EA, Pride DT.

Microbiome. 2015 Nov 9;3:58. doi: 10.1186/s40168-015-0124-3.


Propionibacterium acnes bacteriophages display limited genetic diversity and broad killing activity against bacterial skin isolates.

Marinelli LJ, Fitz-Gibbon S, Hayes C, Bowman C, Inkeles M, Loncaric A, Russell DA, Jacobs-Sera D, Cokus S, Pellegrini M, Kim J, Miller JF, Hatfull GF, Modlin RL.

MBio. 2012 Sep 25;3(5). pii: e00279-12. doi: 10.1128/mBio.00279-12. Print 2012.


The human skin double-stranded DNA virome: topographical and temporal diversity, genetic enrichment, and dynamic associations with the host microbiome.

Hannigan GD, Meisel JS, Tyldsley AS, Zheng Q, Hodkinson BP, SanMiguel AJ, Minot S, Bushman FD, Grice EA.

MBio. 2015 Oct 20;6(5):e01578-15. doi: 10.1128/mBio.01578-15.


Molecular prediction of lytic vs lysogenic states for Microcystis phage: Metatranscriptomic evidence of lysogeny during large bloom events.

Stough JMA, Tang X, Krausfeldt LE, Steffen MM, Gao G, Boyer GL, Wilhelm SW.

PLoS One. 2017 Sep 5;12(9):e0184146. doi: 10.1371/journal.pone.0184146. eCollection 2017.


The impact of bacteriophages on phyllosphere bacterial abundance and composition.

Morella NM, Gomez AL, Wang G, Leung MS, Koskella B.

Mol Ecol. 2018 Apr;27(8):2025-2038. doi: 10.1111/mec.14542. Epub 2018 Mar 15.


Evidence of a robust resident bacteriophage population revealed through analysis of the human salivary virome.

Pride DT, Salzman J, Haynes M, Rohwer F, Davis-Long C, White RA 3rd, Loomer P, Armitage GC, Relman DA.

ISME J. 2012 May;6(5):915-26. doi: 10.1038/ismej.2011.169. Epub 2011 Dec 8.


Bacterial genome remodeling through bacteriophage recombination.

Menouni R, Hutinet G, Petit MA, Ansaldi M.

FEMS Microbiol Lett. 2015 Jan;362(1):1-10. doi: 10.1093/femsle/fnu022. Epub 2014 Dec 4. Review.


Effects of Long Term Antibiotic Therapy on Human Oral and Fecal Viromes.

Abeles SR, Ly M, Santiago-Rodriguez TM, Pride DT.

PLoS One. 2015 Aug 26;10(8):e0134941. doi: 10.1371/journal.pone.0134941. eCollection 2015.


A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules.

Lima-Mendez G, Toussaint A, Leplae R.

Res Microbiol. 2011 Oct;162(8):737-46. doi: 10.1016/j.resmic.2011.06.006. Epub 2011 Jun 28.


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