Similar articles for PMID: 26042145

Year	Number of Results
2002	2
2004	1
2005	2
2006	1
2007	1
2009	1
2010	2
2012	4
2015	9
2016	10
2017	7
2018	7
2019	11
2020	1
2021	1
2022	1
2023	1
2024	0

1

FAST: FAST Analysis of Sequences Toolbox.

Lawrence TJ, Kauffman KT, Amrine KC, Carper DL, Lee RS, Becich PJ, Canales CJ, Ardell DH. Lawrence TJ, et al. Front Genet. 2015 May 19;6:172. doi: 10.3389/fgene.2015.00172. eCollection 2015. Front Genet. 2015. PMID: 26042145 Free PMC article.

2

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines.

Hernández Y, Bernstein R, Pagan P, Vargas L, McCaig W, Ramrattan G, Akther S, Larracuente A, Di L, Vieira FG, Qiu WG. Hernández Y, et al. BMC Bioinformatics. 2018 Mar 2;19(1):76. doi: 10.1186/s12859-018-2074-9. BMC Bioinformatics. 2018. PMID: 29499649 Free PMC article.

3

The Bioperl toolkit: Perl modules for the life sciences.

Stajich JE, Block D, Boulez K, Brenner SE, Chervitz SA, Dagdigian C, Fuellen G, Gilbert JG, Korf I, Lapp H, Lehväslaiho H, Matsalla C, Mungall CJ, Osborne BI, Pocock MR, Schattner P, Senger M, Stein LD, Stupka E, Wilkinson MD, Birney E. Stajich JE, et al. Genome Res. 2002 Oct;12(10):1611-8. doi: 10.1101/gr.361602. Genome Res. 2002. PMID: 12368254 Free PMC article.

4

SLIM: a flexible web application for the reproducible processing of environmental DNA metabarcoding data.

Dufresne Y, Lejzerowicz F, Perret-Gentil LA, Pawlowski J, Cordier T. Dufresne Y, et al. BMC Bioinformatics. 2019 Feb 19;20(1):88. doi: 10.1186/s12859-019-2663-2. BMC Bioinformatics. 2019. PMID: 30782112 Free PMC article.

5

Pyfastx: a robust Python package for fast random access to sequences from plain and gzipped FASTA/Q files.

Du L, Liu Q, Fan Z, Tang J, Zhang X, Price M, Yue B, Zhao K. Du L, et al. Brief Bioinform. 2021 Jul 20;22(4):bbaa368. doi: 10.1093/bib/bbaa368. Brief Bioinform. 2021. PMID: 33341884

6

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants.

Cock PJ, Fields CJ, Goto N, Heuer ML, Rice PM. Cock PJ, et al. Nucleic Acids Res. 2010 Apr;38(6):1767-71. doi: 10.1093/nar/gkp1137. Epub 2009 Dec 16. Nucleic Acids Res. 2010. PMID: 20015970 Free PMC article. Review.

7

SEDA: A Desktop Tool Suite for FASTA Files Processing.

Lopez-Fernandez H, Duque P, Vazquez N, Fdez-Riverola F, Reboiro-Jato M, Vieira CP, Vieira J. Lopez-Fernandez H, et al. IEEE/ACM Trans Comput Biol Bioinform. 2022 May-Jun;19(3):1850-1860. doi: 10.1109/TCBB.2020.3040383. Epub 2022 Jun 3. IEEE/ACM Trans Comput Biol Bioinform. 2022. PMID: 33237866

8

PyPedia: using the wiki paradigm as crowd sourcing environment for bioinformatics protocols.

Kanterakis A, Kuiper J, Potamias G, Swertz MA. Kanterakis A, et al. Source Code Biol Med. 2015 Nov 19;10:14. doi: 10.1186/s13029-015-0042-6. eCollection 2015. Source Code Biol Med. 2015. PMID: 26587054 Free PMC article.

9

fastQ_brew: module for analysis, preprocessing, and reformatting of FASTQ sequence data.

O'Halloran DM. O'Halloran DM. BMC Res Notes. 2017 Jul 12;10(1):275. doi: 10.1186/s13104-017-2616-7. BMC Res Notes. 2017. PMID: 28701181 Free PMC article.

10

Automated Sanger Analysis Pipeline (ASAP): A Tool for Rapidly Analyzing Sanger Sequencing Data with Minimum User Interference.

Singh A, Bhatia P. Singh A, et al. J Biomol Tech. 2016 Dec;27(4):129-131. doi: 10.7171/jbt.16-2704-005. Epub 2016 Oct 17. J Biomol Tech. 2016. PMID: 27790076 Free PMC article.

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