Similar articles for PMID: 25918364

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1

Topology, structures, and energy landscapes of human chromosomes.

Zhang B, Wolynes PG. Zhang B, et al. Proc Natl Acad Sci U S A. 2015 May 12;112(19):6062-7. doi: 10.1073/pnas.1506257112. Epub 2015 Apr 27. Proc Natl Acad Sci U S A. 2015. PMID: 25918364 Free PMC article.

2

Simulation of different three-dimensional polymer models of interphase chromosomes compared to experiments-an evaluation and review framework of the 3D genome organization.

Knoch TA. Knoch TA. Semin Cell Dev Biol. 2019 Jun;90:19-42. doi: 10.1016/j.semcdb.2018.07.012. Epub 2018 Aug 24. Semin Cell Dev Biol. 2019. PMID: 30125668 Review.

3

Shape Transitions and Chiral Symmetry Breaking in the Energy Landscape of the Mitotic Chromosome.

Zhang B, Wolynes PG. Zhang B, et al. Phys Rev Lett. 2016 Jun 17;116(24):248101. doi: 10.1103/PhysRevLett.116.248101. Epub 2016 Jun 14. Phys Rev Lett. 2016. PMID: 27367409

4

Transferable model for chromosome architecture.

Di Pierro M, Zhang B, Aiden EL, Wolynes PG, Onuchic JN. Di Pierro M, et al. Proc Natl Acad Sci U S A. 2016 Oct 25;113(43):12168-12173. doi: 10.1073/pnas.1613607113. Epub 2016 Sep 29. Proc Natl Acad Sci U S A. 2016. PMID: 27688758 Free PMC article.

5

Spatial organization of chromatin domains and compartments in single chromosomes.

Wang S, Su JH, Beliveau BJ, Bintu B, Moffitt JR, Wu CT, Zhuang X. Wang S, et al. Science. 2016 Aug 5;353(6299):598-602. doi: 10.1126/science.aaf8084. Epub 2016 Jul 21. Science. 2016. PMID: 27445307 Free PMC article.

6

Chain organization of human interphase chromosome determines the spatiotemporal dynamics of chromatin loci.

Liu L, Shi G, Thirumalai D, Hyeon C. Liu L, et al. PLoS Comput Biol. 2018 Dec 3;14(12):e1006617. doi: 10.1371/journal.pcbi.1006617. eCollection 2018 Dec. PLoS Comput Biol. 2018. PMID: 30507936 Free PMC article.

7

De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture.

Di Pierro M, Cheng RR, Lieberman Aiden E, Wolynes PG, Onuchic JN. Di Pierro M, et al. Proc Natl Acad Sci U S A. 2017 Nov 14;114(46):12126-12131. doi: 10.1073/pnas.1714980114. Epub 2017 Oct 31. Proc Natl Acad Sci U S A. 2017. PMID: 29087948 Free PMC article.

8

Models that include supercoiling of topological domains reproduce several known features of interphase chromosomes.

Benedetti F, Dorier J, Burnier Y, Stasiak A. Benedetti F, et al. Nucleic Acids Res. 2014 Mar;42(5):2848-55. doi: 10.1093/nar/gkt1353. Epub 2013 Dec 23. Nucleic Acids Res. 2014. PMID: 24366878 Free PMC article.

9

Understanding Spatial Genome Organization: Methods and Insights.

Ramani V, Shendure J, Duan Z. Ramani V, et al. Genomics Proteomics Bioinformatics. 2016 Feb;14(1):7-20. doi: 10.1016/j.gpb.2016.01.002. Epub 2016 Feb 11. Genomics Proteomics Bioinformatics. 2016. PMID: 26876719 Free PMC article. Review.

10

Mini review: form and function in the human interphase chromosome.

Chevret E, Volpi EV, Sheer D. Chevret E, et al. Cytogenet Cell Genet. 2000;90(1-2):13-21. doi: 10.1159/000015654. Cytogenet Cell Genet. 2000. PMID: 11060439 Review.

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