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Items: 1 to 20 of 81

1.

Chromatin immunoprecipitation with fixed animal tissues and preparation for high-throughput sequencing.

Cotney JL, Noonan JP.

Cold Spring Harb Protoc. 2015 Apr 1;2015(4):419. doi: 10.1101/pdb.err087585. No abstract available.

2.

Chromatin immunoprecipitation with fixed animal tissues and preparation for high-throughput sequencing.

Cotney JL, Noonan JP.

Cold Spring Harb Protoc. 2015 Feb 2;2015(2):191-9. doi: 10.1101/pdb.prot084848. Erratum in: Cold Spring Harb Protoc. 2015 Apr;2015(4):419.

PMID:
25646502
3.

An Assessment of Fixed and Native Chromatin Preparation Methods to Study Histone Post-Translational Modifications at a Whole Genome Scale in Skeletal Muscle Tissue.

David SA, Piégu B, Hennequet-Antier C, Pannetier M, Aguirre-Lavin T, Crochet S, Bordeau T, Couroussé N, Brionne A, Bigot Y, Collin A, Coustham V.

Biol Proced Online. 2017 Aug 29;19:10. doi: 10.1186/s12575-017-0059-0. eCollection 2017.

4.

Chromatin immunoprecipitation and high-throughput sequencing from paraffin-embedded pathology tissue.

Fanelli M, Amatori S, Barozzi I, Minucci S.

Nat Protoc. 2011 Nov 10;6(12):1905-19. doi: 10.1038/nprot.2011.406.

PMID:
22082985
5.

ChIP-Seq: Library Preparation and Sequencing.

Sheaffer KL, Schug J.

Methods Mol Biol. 2016;1402:101-117. doi: 10.1007/978-1-4939-3378-5_9.

PMID:
26721486
6.

Chromatin immunoprecipitation and deep sequencing in Xenopus tropicalis and Xenopus laevis.

Wills AE, Gupta R, Chuong E, Baker JC.

Methods. 2014 Apr 1;66(3):410-21. doi: 10.1016/j.ymeth.2013.09.010. Epub 2013 Sep 21.

7.

Chromatin immunoprecipitation from fixed clinical tissues reveals tumor-specific enhancer profiles.

Cejas P, Li L, O'Neill NK, Duarte M, Rao P, Bowden M, Zhou CW, Mendiola M, Burgos E, Feliu J, Moreno-Rubio J, Guadalajara H, Moreno V, García-Olmo D, Bellmunt J, Mullane S, Hirsch M, Sweeney CJ, Richardson A, Liu XS, Brown M, Shivdasani RA, Long HW.

Nat Med. 2016 Jun;22(6):685-91. doi: 10.1038/nm.4085. Epub 2016 Apr 25.

PMID:
27111282
8.

Using native chromatin immunoprecipitation to interrogate histone variant protein deposition in embryonic stem cells.

Tseng Z, Wu T, Liu Y, Zhong M, Xiao A.

Methods Mol Biol. 2014;1176:11-22. doi: 10.1007/978-1-4939-0992-6_2.

PMID:
25030915
9.

Chromatin analyses of Zymoseptoria tritici: Methods for chromatin immunoprecipitation followed by high-throughput sequencing (ChIP-seq).

Soyer JL, Möller M, Schotanus K, Connolly LR, Galazka JM, Freitag M, Stukenbrock EH.

Fungal Genet Biol. 2015 Jun;79:63-70. doi: 10.1016/j.fgb.2015.03.006. Epub 2015 Apr 7.

10.

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Ghavi-Helm Y, Zhao B, Furlong EE.

Methods Mol Biol. 2016;1478:263-277. Review.

PMID:
27730588
11.

Chromatin immunoprecipitation and multiplex sequencing (ChIP-Seq) to identify global transcription factor binding sites in the nematode Caenorhabditis elegans.

Brdlik CM, Niu W, Snyder M.

Methods Enzymol. 2014;539:89-111. doi: 10.1016/B978-0-12-420120-0.00007-4.

PMID:
24581441
12.

ChIPseq in Yeast Species: From Chromatin Immunoprecipitation to High-Throughput Sequencing and Bioinformatics Data Analyses.

Lelandais G, Blugeon C, Merhej J.

Methods Mol Biol. 2016;1361:185-202. doi: 10.1007/978-1-4939-3079-1_11.

PMID:
26483023
13.

Pathology tissue-chromatin immunoprecipitation, coupled with high-throughput sequencing, allows the epigenetic profiling of patient samples.

Fanelli M, Amatori S, Barozzi I, Soncini M, Dal Zuffo R, Bucci G, Capra M, Quarto M, Dellino GI, Mercurio C, Alcalay M, Viale G, Pelicci PG, Minucci S.

Proc Natl Acad Sci U S A. 2010 Dec 14;107(50):21535-40. doi: 10.1073/pnas.1007647107. Epub 2010 Nov 24.

14.

Chromatin Preparation and Chromatin Immuno-precipitation from Drosophila Embryos.

Löser E, Latreille D, Iovino N.

Methods Mol Biol. 2016;1480:23-36. doi: 10.1007/978-1-4939-6380-5_3. Erratum in: Methods Mol Biol. 2016;1480:E1.

PMID:
27659972
15.

Genome-wide chromatin immunoprecipitation-sequencing in Plasmodium.

Lopez-Rubio JJ, Siegel TN, Scherf A.

Methods Mol Biol. 2013;923:321-33.

PMID:
22990789
16.

Chromatin immunoprecipitation and chromatin immunoprecipitation with massively parallel sequencing on mouse embryonic tissue.

Amin S, Bobola N.

Methods Mol Biol. 2014;1196:231-9. doi: 10.1007/978-1-4939-1242-1_14.

PMID:
25151167
17.

Mapping regulatory factors by immunoprecipitation from native chromatin.

Orsi GA, Kasinathan S, Zentner GE, Henikoff S, Ahmad K.

Curr Protoc Mol Biol. 2015 Apr 1;110:21.31.1-25. doi: 10.1002/0471142727.mb2131s110.

18.

Chromatin Immunoprecipitation-Sequencing (ChIP-seq) for Mapping of Estrogen Receptor-Chromatin Interactions in Breast Cancer.

Holmes KA, Brown GD, Carroll JS.

Methods Mol Biol. 2016;1366:79-98. doi: 10.1007/978-1-4939-3127-9_8.

PMID:
26585129
19.

Mapping Nuclear Lamin-Genome Interactions by Chromatin Immunoprecipitation of Nuclear Lamins.

Oldenburg AR, Collas P.

Methods Mol Biol. 2016;1411:315-24. doi: 10.1007/978-1-4939-3530-7_20.

PMID:
27147051
20.

ChIP-Seq using high-throughput DNA sequencing for genome-wide identification of transcription factor binding sites.

Lefrançois P, Zheng W, Snyder M.

Methods Enzymol. 2010;470:77-104. doi: 10.1016/S0076-6879(10)70004-5. Epub 2010 Mar 1.

PMID:
20946807

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