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Items: 1 to 20 of 111

1.

Methylation-sensitive expression of a DNA demethylase gene serves as an epigenetic rheostat.

Williams BP, Pignatta D, Henikoff S, Gehring M.

PLoS Genet. 2015 Mar 31;11(3):e1005142. doi: 10.1371/journal.pgen.1005142. eCollection 2015 Mar.

2.

Regulatory link between DNA methylation and active demethylation in Arabidopsis.

Lei M, Zhang H, Julian R, Tang K, Xie S, Zhu JK.

Proc Natl Acad Sci U S A. 2015 Mar 17;112(11):3553-7. doi: 10.1073/pnas.1502279112. Epub 2015 Mar 2.

3.

The DNA demethylase ROS1 targets genomic regions with distinct chromatin modifications.

Tang K, Lang Z, Zhang H, Zhu JK.

Nat Plants. 2016 Oct 31;2(11):16169. doi: 10.1038/nplants.2016.169.

4.

The initiation of epigenetic silencing of active transposable elements is triggered by RDR6 and 21-22 nucleotide small interfering RNAs.

Nuthikattu S, McCue AD, Panda K, Fultz D, DeFraia C, Thomas EN, Slotkin RK.

Plant Physiol. 2013 May;162(1):116-31. doi: 10.1104/pp.113.216481. Epub 2013 Mar 29.

5.

A Pre-mRNA-splicing factor is required for RNA-directed DNA methylation in Arabidopsis.

Huang CF, Miki D, Tang K, Zhou HR, Zheng Z, Chen W, Ma ZY, Yang L, Zhang H, Liu R, He XJ, Zhu JK.

PLoS Genet. 2013;9(9):e1003779. doi: 10.1371/journal.pgen.1003779. Epub 2013 Sep 12.

6.

Full-length autonomous transposable elements are preferentially targeted by expression-dependent forms of RNA-directed DNA methylation.

Panda K, Ji L, Neumann DA, Daron J, Schmitz RJ, Slotkin RK.

Genome Biol. 2016 Aug 9;17(1):170. doi: 10.1186/s13059-016-1032-y.

7.

Role of the Arabidopsis DNA glycosylase/lyase ROS1 in active DNA demethylation.

Agius F, Kapoor A, Zhu JK.

Proc Natl Acad Sci U S A. 2006 Aug 1;103(31):11796-801. Epub 2006 Jul 24.

8.

Overproduction of stomatal lineage cells in Arabidopsis mutants defective in active DNA demethylation.

Yamamuro C, Miki D, Zheng Z, Ma J, Wang J, Yang Z, Dong J, Zhu JK.

Nat Commun. 2014 Jun 5;5:4062. doi: 10.1038/ncomms5062.

9.

Genome-wide identification of endogenous RNA-directed DNA methylation loci associated with abundant 21-nucleotide siRNAs in Arabidopsis.

Zhao JH, Fang YY, Duan CG, Fang RX, Ding SW, Guo HS.

Sci Rep. 2016 Oct 27;6:36247. doi: 10.1038/srep36247.

10.

DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis.

Le TN, Schumann U, Smith NA, Tiwari S, Au PC, Zhu QH, Taylor JM, Kazan K, Llewellyn DJ, Zhang R, Dennis ES, Wang MB.

Genome Biol. 2014 Sep 17;15(9):458. doi: 10.1186/s13059-014-0458-3.

11.

Interplay between active chromatin marks and RNA-directed DNA methylation in Arabidopsis thaliana.

Greenberg MV, Deleris A, Hale CJ, Liu A, Feng S, Jacobsen SE.

PLoS Genet. 2013 Nov;9(11):e1003946. doi: 10.1371/journal.pgen.1003946. Epub 2013 Nov 7.

12.

A group of SUVH methyl-DNA binding proteins regulate expression of the DNA demethylase ROS1 in Arabidopsis.

Xiao X, Zhang J, Li T, Fu X, Satheesh V, Niu Q, Lang Z, Zhu JK, Lei M.

J Integr Plant Biol. 2019 Feb;61(2):110-119. doi: 10.1111/jipb.12768.

PMID:
30589237
13.

Modeling Interactions between Transposable Elements and the Plant Epigenetic Response: A Surprising Reliance on Element Retention.

Roessler K, Bousios A, Meca E, Gaut BS.

Genome Biol Evol. 2018 Mar 1;10(3):803-815. doi: 10.1093/gbe/evy043.

14.

The DNA glycosylase/lyase ROS1 functions in pruning DNA methylation patterns in Arabidopsis.

Zhu J, Kapoor A, Sridhar VV, Agius F, Zhu JK.

Curr Biol. 2007 Jan 9;17(1):54-9.

15.

Mutations in a conserved replication protein suppress transcriptional gene silencing in a DNA-methylation-independent manner in Arabidopsis.

Kapoor A, Agarwal M, Andreucci A, Zheng X, Gong Z, Hasegawa PM, Bressan RA, Zhu JK.

Curr Biol. 2005 Nov 8;15(21):1912-8.

16.

JMJ24 binds to RDR2 and is required for the basal level transcription of silenced loci in Arabidopsis.

Deng S, Xu J, Liu J, Kim SH, Shi S, Chua NH.

Plant J. 2015 Sep;83(5):770-82. doi: 10.1111/tpj.12924. Epub 2015 Jul 31.

17.

MET18 Connects the Cytosolic Iron-Sulfur Cluster Assembly Pathway to Active DNA Demethylation in Arabidopsis.

Duan CG, Wang X, Tang K, Zhang H, Mangrauthia SK, Lei M, Hsu CC, Hou YJ, Wang C, Li Y, Tao WA, Zhu JK.

PLoS Genet. 2015 Oct 22;11(10):e1005559. doi: 10.1371/journal.pgen.1005559. eCollection 2015 Oct.

18.

SAC3B, a central component of the mRNA export complex TREX-2, is required for prevention of epigenetic gene silencing in Arabidopsis.

Yang Y, La H, Tang K, Miki D, Yang L, Wang B, Duan CG, Nie W, Wang X, Wang S, Pan Y, Tran EJ, An L, Zhang H, Zhu JK.

Nucleic Acids Res. 2017 Jan 9;45(1):181-197. doi: 10.1093/nar/gkw850. Epub 2016 Sep 26.

19.

ROS1-Dependent DNA Demethylation Is Required for ABA-Inducible NIC3 Expression.

Kim JS, Lim JY, Shin H, Kim BG, Yoo SD, Kim WT, Huh JH.

Plant Physiol. 2019 Apr;179(4):1810-1821. doi: 10.1104/pp.18.01471. Epub 2019 Jan 28.

20.

DNA demethylase ROS1 negatively regulates the imprinting of DOGL4 and seed dormancy in Arabidopsis thaliana.

Zhu H, Xie W, Xu D, Miki D, Tang K, Huang CF, Zhu JK.

Proc Natl Acad Sci U S A. 2018 Oct 16;115(42):E9962-E9970. doi: 10.1073/pnas.1812847115. Epub 2018 Sep 28.

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