Similar articles for PMID: 25810435

Year	Number of Results
1917	1
2001	2
2004	1
2005	1
2007	2
2008	4
2009	3
2010	4
2011	4
2012	7
2013	6
2014	3
2015	13
2016	12
2017	13
2018	8
2019	7
2020	3
2021	5
2022	5
2024	0

1

Bosi E, Donati B, Galardini M, Brunetti S, Sagot MF, Lió P, Crescenzi P, Fani R, Fondi M. Bosi E, et al. Bioinformatics. 2015 Aug 1;31(15):2443-51. doi: 10.1093/bioinformatics/btv171. Epub 2015 Mar 25. Bioinformatics. 2015. PMID: 25810435

2

Multi-CAR: a tool of contig scaffolding using multiple references.

Chen KT, Chen CJ, Shen HT, Liu CL, Huang SH, Lu CL. Chen KT, et al. BMC Bioinformatics. 2016 Dec 23;17(Suppl 17):469. doi: 10.1186/s12859-016-1328-7. BMC Bioinformatics. 2016. PMID: 28155633 Free PMC article.

3

SCARPA: scaffolding reads with practical algorithms.

Donmez N, Brudno M. Donmez N, et al. Bioinformatics. 2013 Feb 15;29(4):428-34. doi: 10.1093/bioinformatics/bts716. Epub 2012 Dec 29. Bioinformatics. 2013. PMID: 23274213

4

Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements.

Chen KT, Shen HT, Lu CL. Chen KT, et al. BMC Syst Biol. 2018 Dec 31;12(Suppl 9):139. doi: 10.1186/s12918-018-0654-y. BMC Syst Biol. 2018. PMID: 30598087 Free PMC article.

5

Hierarchical scaffolding with Bambus.

Pop M, Kosack DS, Salzberg SL. Pop M, et al. Genome Res. 2004 Jan;14(1):149-59. doi: 10.1101/gr.1536204. Genome Res. 2004. PMID: 14707177 Free PMC article.

6

GRASS: a generic algorithm for scaffolding next-generation sequencing assemblies.

Gritsenko AA, Nijkamp JF, Reinders MJ, de Ridder D. Gritsenko AA, et al. Bioinformatics. 2012 Jun 1;28(11):1429-37. doi: 10.1093/bioinformatics/bts175. Epub 2012 Apr 6. Bioinformatics. 2012. PMID: 22492642

7

Scaffolding pre-assembled contigs using SSPACE.

Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W. Boetzer M, et al. Bioinformatics. 2011 Feb 15;27(4):578-9. doi: 10.1093/bioinformatics/btq683. Epub 2010 Dec 12. Bioinformatics. 2011. PMID: 21149342

8

CSAR: a contig scaffolding tool using algebraic rearrangements.

Chen KT, Liu CL, Huang SH, Shen HT, Shieh YK, Chiu HT, Lu CL. Chen KT, et al. Bioinformatics. 2018 Jan 1;34(1):109-111. doi: 10.1093/bioinformatics/btx543. Bioinformatics. 2018. PMID: 28968788

9

CAR: contig assembly of prokaryotic draft genomes using rearrangements.

Lu CL, Chen KT, Huang SY, Chiu HT. Lu CL, et al. BMC Bioinformatics. 2014 Nov 28;15(1):381. doi: 10.1186/s12859-014-0381-3. BMC Bioinformatics. 2014. PMID: 25431302 Free PMC article.

10

Mapping contigs using CONTIGuator.

Galardini M, Mengoni A, Bazzicalupo M. Galardini M, et al. Methods Mol Biol. 2015;1231:163-76. doi: 10.1007/978-1-4939-1720-4_11. Methods Mol Biol. 2015. PMID: 25343865

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