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Items: 1 to 20 of 117

1.

Salmonella serotype determination utilizing high-throughput genome sequencing data.

Zhang S, Yin Y, Jones MB, Zhang Z, Deatherage Kaiser BL, Dinsmore BA, Fitzgerald C, Fields PI, Deng X.

J Clin Microbiol. 2015 May;53(5):1685-92. doi: 10.1128/JCM.00323-15. Epub 2015 Mar 11.

2.

SeqSero2: Rapid and Improved Salmonella Serotype Determination Using Whole-Genome Sequencing Data.

Zhang S, den Bakker HC, Li S, Chen J, Dinsmore BA, Lane C, Lauer AC, Fields PI, Deng X.

Appl Environ Microbiol. 2019 Nov 14;85(23). pii: e01746-19. doi: 10.1128/AEM.01746-19. Print 2019 Dec 1.

PMID:
31540993
3.

Salmonella Serotyping; Comparison of the Traditional Method to a Microarray-Based Method and an in silico Platform Using Whole Genome Sequencing Data.

Diep B, Barretto C, Portmann AC, Fournier C, Karczmarek A, Voets G, Li S, Deng X, Klijn A.

Front Microbiol. 2019 Nov 11;10:2554. doi: 10.3389/fmicb.2019.02554. eCollection 2019.

4.

Salmonella Serotyping Using Whole Genome Sequencing.

Ibrahim GM, Morin PM.

Front Microbiol. 2018 Dec 13;9:2993. doi: 10.3389/fmicb.2018.02993. eCollection 2018.

5.

Characterization of new Salmonella serovars by whole-genome sequencing and traditional typing techniques.

Bale J, Meunier D, Weill FX, dePinna E, Peters T, Nair S.

J Med Microbiol. 2016 Oct;65(10):1074-1078. doi: 10.1099/jmm.0.000325. Epub 2016 Aug 1.

PMID:
27481354
6.

Implementation of Salmonella serotype determination using pulsed-field gel electrophoresis in a state public health laboratory.

Bopp DJ, Baker DJ, Thompson L, Saylors A, Root TP, Armstrong L, Mitchell K, Dumas NB, Musser KA.

Diagn Microbiol Infect Dis. 2016 Aug;85(4):416-8. doi: 10.1016/j.diagmicrobio.2016.04.023. Epub 2016 May 5.

PMID:
27220605
7.

The Salmonella In Silico Typing Resource (SISTR): An Open Web-Accessible Tool for Rapidly Typing and Subtyping Draft Salmonella Genome Assemblies.

Yoshida CE, Kruczkiewicz P, Laing CR, Lingohr EJ, Gannon VP, Nash JH, Taboada EN.

PLoS One. 2016 Jan 22;11(1):e0147101. doi: 10.1371/journal.pone.0147101. eCollection 2016.

8.

Rapid and Easy In Silico Serotyping of Escherichia coli Isolates by Use of Whole-Genome Sequencing Data.

Joensen KG, Tetzschner AM, Iguchi A, Aarestrup FM, Scheutz F.

J Clin Microbiol. 2015 Aug;53(8):2410-26. doi: 10.1128/JCM.00008-15. Epub 2015 May 13.

9.

The Validation and Implications of Using Whole Genome Sequencing as a Replacement for Traditional Serotyping for a National Salmonella Reference Laboratory.

Yachison CA, Yoshida C, Robertson J, Nash JHE, Kruczkiewicz P, Taboada EN, Walker M, Reimer A, Christianson S, Nichani A; PulseNet Canada Steering Committee, Nadon C.

Front Microbiol. 2017 Jun 9;8:1044. doi: 10.3389/fmicb.2017.01044. eCollection 2017.

10.

A real-time multiplex SYBR Green I polymerase chain reaction assay for rapid screening of salmonella serotypes prevalent in the European Union.

Rajtak U, Leonard N, Bolton D, Fanning S.

Foodborne Pathog Dis. 2011 Jul;8(7):769-80. doi: 10.1089/fpd.2010.0768. Epub 2011 Mar 7.

PMID:
21381925
11.

In Silico Serotyping Based on Whole-Genome Sequencing Improves the Accuracy of Shigella Identification.

Wu Y, Lau HK, Lee T, Lau DK, Payne J.

Appl Environ Microbiol. 2019 Mar 22;85(7). pii: e00165-19. doi: 10.1128/AEM.00165-19. Print 2019 Apr 1.

12.

Molecular methods for serovar determination of Salmonella.

Shi C, Singh P, Ranieri ML, Wiedmann M, Moreno Switt AI.

Crit Rev Microbiol. 2015;41(3):309-25. doi: 10.3109/1040841X.2013.837862. Epub 2013 Nov 14. Review.

PMID:
24228625
13.

Data mining tools for Salmonella characterization: application to gel-based fingerprinting analysis.

Zou W, Tang H, Zhao W, Meehan J, Foley SL, Lin WJ, Chen HC, Fang H, Nayak R, Chen JJ.

BMC Bioinformatics. 2013;14 Suppl 14:S15. doi: 10.1186/1471-2105-14-S14-S15. Epub 2013 Oct 9.

14.

A restriction fragment length polymorphism-based polymerase chain reaction as an alternative to serotyping for identifying Salmonella serotypes.

Hong Y, Liu T, Hofacre C, Maier M, White DG, Ayers S, Wang L, Maurer JJ.

Avian Dis. 2003 Apr-Jun;47(2):387-95.

PMID:
12887198
15.

Comprehensive assessment of the quality of Salmonella whole genome sequence data available in public sequence databases using the Salmonella in silico Typing Resource (SISTR).

Robertson J, Yoshida C, Kruczkiewicz P, Nadon C, Nichani A, Taboada EN, Nash JHE.

Microb Genom. 2018 Feb;4(2). doi: 10.1099/mgen.0.000151. Epub 2018 Jan 17.

16.

Diversity of Salmonella isolates using serotyping and multilocus sequence typing.

Liu WB, Liu B, Zhu XN, Yu SJ, Shi XM.

Food Microbiol. 2011 Sep;28(6):1182-9. doi: 10.1016/j.fm.2011.04.001. Epub 2011 Apr 15.

PMID:
21645818
17.

Evaluation of persistence and distribution of Salmonella serotype isolation from poultry farms using drag-swab sampling.

Caldwell DJ, Hargis BM, Corrier DE, Vidal L, DeLoach JR.

Avian Dis. 1995 Jul-Sep;39(3):617-21.

PMID:
8561748
18.

Implementation of Whole Genome Sequencing (WGS) for Identification and Characterization of Shiga Toxin-Producing Escherichia coli (STEC) in the United States.

Lindsey RL, Pouseele H, Chen JC, Strockbine NA, Carleton HA.

Front Microbiol. 2016 May 23;7:766. doi: 10.3389/fmicb.2016.00766. eCollection 2016.

19.

Comparing the ability of luminex xMAP(®) salmonella serotyping assay and traditional serotyping method for serotyping salmonella isolated from southern Chinese population.

Liang DW, Lu JH, Wu Q, Ke BX, Jiang CH, Long J, Fang YP, Lin LJ, Zeng NY, Fu L, Jiang LX.

J Appl Microbiol. 2016 Jun;120(6):1668-76. doi: 10.1111/jam.13106. Epub 2016 Apr 4.

20.

An improved DNA array-based classification method for the identification of Salmonella serotypes shows high concordance between traditional and genotypic testing.

Robertson J, Yoshida C, Gurnik S, McGrogan M, Davis K, Arya G, Murphy SA, Nichani A, Nash JHE.

PLoS One. 2018 Dec 4;13(12):e0207550. doi: 10.1371/journal.pone.0207550. eCollection 2018.

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