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Items: 1 to 20 of 124

1.

NCBI viral genomes resource.

Brister JR, Ako-Adjei D, Bao Y, Blinkova O.

Nucleic Acids Res. 2015 Jan;43(Database issue):D571-7. doi: 10.1093/nar/gku1207. Epub 2014 Nov 26.

2.
3.

Update on RefSeq microbial genomes resources.

Tatusova T, Ciufo S, Federhen S, Fedorov B, McVeigh R, O'Neill K, Tolstoy I, Zaslavsky L.

Nucleic Acids Res. 2015 Jan;43(Database issue):D599-605. doi: 10.1093/nar/gku1062. Epub 2014 Dec 15.

4.

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.

O'Leary NA, Wright MW, Brister JR, Ciufo S, Haddad D, McVeigh R, Rajput B, Robbertse B, Smith-White B, Ako-Adjei D, Astashyn A, Badretdin A, Bao Y, Blinkova O, Brover V, Chetvernin V, Choi J, Cox E, Ermolaeva O, Farrell CM, Goldfarb T, Gupta T, Haft D, Hatcher E, Hlavina W, Joardar VS, Kodali VK, Li W, Maglott D, Masterson P, McGarvey KM, Murphy MR, O'Neill K, Pujar S, Rangwala SH, Rausch D, Riddick LD, Schoch C, Shkeda A, Storz SS, Sun H, Thibaud-Nissen F, Tolstoy I, Tully RE, Vatsan AR, Wallin C, Webb D, Wu W, Landrum MJ, Kimchi A, Tatusova T, DiCuccio M, Kitts P, Murphy TD, Pruitt KD.

Nucleic Acids Res. 2016 Jan 4;44(D1):D733-45. doi: 10.1093/nar/gkv1189. Epub 2015 Nov 8.

5.

VAPiD: a lightweight cross-platform viral annotation pipeline and identification tool to facilitate virus genome submissions to NCBI GenBank.

Shean RC, Makhsous N, Stoddard GD, Lin MJ, Greninger AL.

BMC Bioinformatics. 2019 Jan 23;20(1):48. doi: 10.1186/s12859-019-2606-y.

6.

Virus Variation Resource--recent updates and future directions.

Brister JR, Bao Y, Zhdanov SA, Ostapchuck Y, Chetvernin V, Kiryutin B, Zaslavsky L, Kimelman M, Tatusova TA.

Nucleic Acids Res. 2014 Jan;42(Database issue):D660-5. doi: 10.1093/nar/gkt1268. Epub 2013 Dec 4.

7.

RefSeq microbial genomes database: new representation and annotation strategy.

Tatusova T, Ciufo S, Fedorov B, O'Neill K, Tolstoy I.

Nucleic Acids Res. 2014 Jan;42(Database issue):D553-9. doi: 10.1093/nar/gkt1274. Epub 2013 Dec 6. Erratum in: Nucleic Acids Res. 2015 Apr 20;43(7):3872.

8.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.

9.

FLAN: a web server for influenza virus genome annotation.

Bao Y, Bolotov P, Dernovoy D, Kiryutin B, Tatusova T.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W280-4. Epub 2007 Jun 1.

10.

GenBank.

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. doi: 10.1093/nar/gks1195. Epub 2012 Nov 27.

11.

Poxvirus Bioinformatics Resource Center: a comprehensive Poxviridae informational and analytical resource.

Lefkowitz EJ, Upton C, Changayil SS, Buck C, Traktman P, Buller RM.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D311-6.

12.

Assembly: a resource for assembled genomes at NCBI.

Kitts PA, Church DM, Thibaud-Nissen F, Choi J, Hem V, Sapojnikov V, Smith RG, Tatusova T, Xiang C, Zherikov A, DiCuccio M, Murphy TD, Pruitt KD, Kimchi A.

Nucleic Acids Res. 2016 Jan 4;44(D1):D73-80. doi: 10.1093/nar/gkv1226. Epub 2015 Nov 17.

13.

Genomic BLAST: custom-defined virtual databases for complete and unfinished genomes.

Cummings L, Riley L, Black L, Souvorov A, Resenchuk S, Dondoshansky I, Tatusova T.

FEMS Microbiol Lett. 2002 Nov 5;216(2):133-8.

14.

A web-based genotyping resource for viral sequences.

Rozanov M, Plikat U, Chappey C, Kochergin A, Tatusova T.

Nucleic Acids Res. 2004 Jul 1;32(Web Server issue):W654-9.

15.

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy.

Pruitt KD, Tatusova T, Brown GR, Maglott DR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D130-5. doi: 10.1093/nar/gkr1079. Epub 2011 Nov 24.

16.

RefSeq: an update on mammalian reference sequences.

Pruitt KD, Brown GR, Hiatt SM, Thibaud-Nissen F, Astashyn A, Ermolaeva O, Farrell CM, Hart J, Landrum MJ, McGarvey KM, Murphy MR, O'Leary NA, Pujar S, Rajput B, Rangwala SH, Riddick LD, Shkeda A, Sun H, Tamez P, Tully RE, Wallin C, Webb D, Weber J, Wu W, DiCuccio M, Kitts P, Maglott DR, Murphy TD, Ostell JM.

Nucleic Acids Res. 2014 Jan;42(Database issue):D756-63. doi: 10.1093/nar/gkt1114. Epub 2013 Nov 19.

17.

Complete genomes in WWW Entrez: data representation and analysis.

Tatusova TA, Karsch-Mizrachi I, Ostell JA.

Bioinformatics. 1999 Jul-Aug;15(7-8):536-43.

PMID:
10487861
18.

Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification.

Bao Y, Chetvernin V, Tatusova T.

Arch Virol. 2014 Dec;159(12):3293-304. doi: 10.1007/s00705-014-2197-x. Epub 2014 Aug 14.

19.

Database resources of the National Center for Biotechnology Information.

Sayers EW, Barrett T, Benson DA, Bolton E, Bryant SH, Canese K, Chetvernin V, Church DM, Dicuccio M, Federhen S, Feolo M, Geer LY, Helmberg W, Kapustin Y, Landsman D, Lipman DJ, Lu Z, Madden TL, Madej T, Maglott DR, Marchler-Bauer A, Miller V, Mizrachi I, Ostell J, Panchenko A, Pruitt KD, Schuler GD, Sequeira E, Sherry ST, Shumway M, Sirotkin K, Slotta D, Souvorov A, Starchenko G, Tatusova TA, Wagner L, Wang Y, John Wilbur W, Yaschenko E, Ye J.

Nucleic Acids Res. 2010 Jan;38(Database issue):D5-16. doi: 10.1093/nar/gkp967. Epub 2009 Nov 12.

20.

phiGENOME: an integrative navigation throughout bacteriophage genomes.

Stano M, Klucar L.

Genomics. 2011 Nov;98(5):376-80. doi: 10.1016/j.ygeno.2011.07.004. Epub 2011 Jul 30.

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