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Items: 1 to 20 of 71


EHFPI: a database and analysis resource of essential host factors for pathogenic infection.

Liu Y, Xie D, Han L, Bai H, Li F, Wang S, Bo X.

Nucleic Acids Res. 2015 Jan;43(Database issue):D946-55. doi: 10.1093/nar/gku1086. Epub 2014 Nov 20.


Exploring the associations of host genes for viral infection revealed by genome-wide RNAi and virus-host protein interactions.

Xie D, Han L, Luo Y, Liu Y, He S, Bai H, Wang S, Bo X.

Mol Biosyst. 2015 Sep;11(9):2511-9. doi: 10.1039/c5mb00309a.


vhfRNAi: a web-platform for analysis of host genes involved in viral infections discovered by genome wide RNAi screens.

Thakur A, Qureshi A, Kumar M.

Mol Biosyst. 2017 Jun 27;13(7):1377-1387. doi: 10.1039/c6mb00841k.


HPIDB--a unified resource for host-pathogen interactions.

Kumar R, Nanduri B.

BMC Bioinformatics. 2010 Oct 7;11 Suppl 6:S16. doi: 10.1186/1471-2105-11-S6-S16.


Progress in computational studies of host-pathogen interactions.

Zhou H, Jin J, Wong L.

J Bioinform Comput Biol. 2013 Apr;11(2):1230001. doi: 10.1142/S0219720012300018. Epub 2012 Oct 24. Review.


Systematic approaches towards the development of host-directed antiviral therapeutics.

Prussia A, Thepchatri P, Snyder JP, Plemper RK.

Int J Mol Sci. 2011;12(6):4027-52. doi: 10.3390/ijms12064027. Epub 2011 Jun 15. Review.


BioHealthBase: informatics support in the elucidation of influenza virus host pathogen interactions and virulence.

Squires B, Macken C, Garcia-Sastre A, Godbole S, Noronha J, Hunt V, Chang R, Larsen CN, Klem E, Biersack K, Scheuermann RH.

Nucleic Acids Res. 2008 Jan;36(Database issue):D497-503. Epub 2007 Oct 26.


Illuminating the host - how RNAi screens shed light on host-pathogen interactions.

PrudĂȘncio M, Lehmann MJ.

Biotechnol J. 2009 Jun;4(6):826-37. doi: 10.1002/biot.200900071. Review.


Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.


PhytoPath: an integrative resource for plant pathogen genomics.

Pedro H, Maheswari U, Urban M, Irvine AG, Cuzick A, McDowall MD, Staines DM, Kulesha E, Hammond-Kosack KE, Kersey PJ.

Nucleic Acids Res. 2016 Jan 4;44(D1):D688-93. doi: 10.1093/nar/gkv1052. Epub 2015 Oct 17.


p53FamTaG: a database resource of human p53, p63 and p73 direct target genes combining in silico prediction and microarray data.

SbisĂ  E, Catalano D, Grillo G, Licciulli F, Turi A, Liuni S, Pesole G, De Grassi A, Caratozzolo MF, D'Erchia AM, Navarro B, Tullo A, Saccone C, Gisel A.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S20.


Virus pathogen database and analysis resource (ViPR): a comprehensive bioinformatics database and analysis resource for the coronavirus research community.

Pickett BE, Greer DS, Zhang Y, Stewart L, Zhou L, Sun G, Gu Z, Kumar S, Zaremba S, Larsen CN, Jen W, Klem EB, Scheuermann RH.

Viruses. 2012 Nov 19;4(11):3209-26. doi: 10.3390/v4113209.


TOPS: a versatile software tool for statistical analysis and visualization of combinatorial gene-gene and gene-drug interaction screens.

Muellner MK, Duernberger G, Ganglberger F, Kerzendorfer C, Uras IZ, Schoenegger A, Bagienski K, Colinge J, Nijman SM.

BMC Bioinformatics. 2014 Apr 8;15:98. doi: 10.1186/1471-2105-15-98.


IBDsite: a Galaxy-interacting, integrative database for supporting inflammatory bowel disease high throughput data analysis.

Merelli I, Viti F, Milanesi L.

BMC Bioinformatics. 2012;13 Suppl 14:S5. doi: 10.1186/1471-2105-13-S14-S5. Epub 2012 Sep 7.


A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila.

Pacifico S, Liu G, Guest S, Parrish JR, Fotouhi F, Finley RL Jr.

BMC Bioinformatics. 2006 Apr 7;7:195.


T-iDT : tool for identification of drug target in bacteria and validation by Mycobacterium tuberculosis.

Singh NK, Selvam SM, Chakravarthy P.

In Silico Biol. 2006;6(6):485-93.


Predicting the interactome of Xanthomonas oryzae pathovar oryzae for target selection and DB service.

Kim JG, Park D, Kim BC, Cho SW, Kim YT, Park YJ, Cho HJ, Park H, Kim KB, Yoon KO, Park SJ, Lee BM, Bhak J.

BMC Bioinformatics. 2008 Jan 24;9:41. doi: 10.1186/1471-2105-9-41.


Functional gene discovery using RNA interference-based genomic screens to combat pathogen infection.

Hong-Geller E, Micheva-Viteva SN.

Curr Drug Discov Technol. 2010 Jun;7(2):86-94. Review.


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