Similar articles for PMID: 25407802

Year	Number of Results
1972	1
1989	1
1992	1
2000	3
2002	1
2003	1
2005	2
2006	1
2007	9
2008	8
2009	4
2010	6
2011	17
2012	15
2013	25
2014	22
2015	27
2016	26
2017	17
2018	26
2019	25
2020	24
2021	21
2022	19
2023	8
2024	0

1

Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms.

Speiser DI, Pankey MS, Zaharoff AK, Battelle BA, Bracken-Grissom HD, Breinholt JW, Bybee SM, Cronin TW, Garm A, Lindgren AR, Patel NH, Porter ML, Protas ME, Rivera AS, Serb JM, Zigler KS, Crandall KA, Oakley TH. Speiser DI, et al. BMC Bioinformatics. 2014 Nov 19;15(1):350. doi: 10.1186/s12859-014-0350-x. BMC Bioinformatics. 2014. PMID: 25407802 Free PMC article.

2

Osiris: accessible and reproducible phylogenetic and phylogenomic analyses within the Galaxy workflow management system.

Oakley TH, Alexandrou MA, Ngo R, Pankey MS, Churchill CK, Chen W, Lopker KB. Oakley TH, et al. BMC Bioinformatics. 2014 Jul 2;15:230. doi: 10.1186/1471-2105-15-230. BMC Bioinformatics. 2014. PMID: 24990571 Free PMC article.

3

ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species.

Zeng V, Extavour CG. Zeng V, et al. Database (Oxford). 2012 Nov 23;2012:bas048. doi: 10.1093/database/bas048. Print 2012. Database (Oxford). 2012. PMID: 23180770 Free PMC article.

4

PARRoT- a homology-based strategy to quantify and compare RNA-sequencing from non-model organisms.

Gan RC, Chen TW, Wu TH, Huang PJ, Lee CC, Yeh YM, Chiu CH, Huang HD, Tang P. Gan RC, et al. BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):513. doi: 10.1186/s12859-016-1366-1. BMC Bioinformatics. 2016. PMID: 28155708 Free PMC article.

5

Comparative transcriptomics enlarges the toolkit of known developmental genes in mollusks.

De Oliveira AL, Wollesen T, Kristof A, Scherholz M, Redl E, Todt C, Bleidorn C, Wanninger A. De Oliveira AL, et al. BMC Genomics. 2016 Nov 10;17(1):905. doi: 10.1186/s12864-016-3080-9. BMC Genomics. 2016. PMID: 27832738 Free PMC article.

6

Reptilian Transcriptomes v2.0: An Extensive Resource for Sauropsida Genomics and Transcriptomics.

Tzika AC, Ullate-Agote A, Grbic D, Milinkovitch MC. Tzika AC, et al. Genome Biol Evol. 2015 Jul 1;7(6):1827-41. doi: 10.1093/gbe/evv106. Genome Biol Evol. 2015. PMID: 26133641 Free PMC article.

7

Resolving Relationships among the Megadiverse Butterflies and Moths with a Novel Pipeline for Anchored Phylogenomics.

Breinholt JW, Earl C, Lemmon AR, Lemmon EM, Xiao L, Kawahara AY. Breinholt JW, et al. Syst Biol. 2018 Jan 1;67(1):78-93. doi: 10.1093/sysbio/syx048. Syst Biol. 2018. PMID: 28472519

8

PANTHER: Making genome-scale phylogenetics accessible to all.

Thomas PD, Ebert D, Muruganujan A, Mushayahama T, Albou LP, Mi H. Thomas PD, et al. Protein Sci. 2022 Jan;31(1):8-22. doi: 10.1002/pro.4218. Epub 2021 Nov 25. Protein Sci. 2022. PMID: 34717010 Free PMC article. Review.

9

The aquatic animals' transcriptome resource for comparative functional analysis.

Chou CH, Huang HY, Huang WC, Hsu SD, Hsiao CD, Liu CY, Chen YH, Liu YC, Huang WY, Lee ML, Chen YC, Huang HD. Chou CH, et al. BMC Genomics. 2018 May 9;19(Suppl 2):103. doi: 10.1186/s12864-018-4463-x. BMC Genomics. 2018. PMID: 29764375 Free PMC article.

10

A new transcriptome and transcriptome profiling of adult and larval tissue in the box jellyfish Alatina alata: an emerging model for studying venom, vision and sex.

Lewis Ames C, Ryan JF, Bely AE, Cartwright P, Collins AG. Lewis Ames C, et al. BMC Genomics. 2016 Aug 17;17:650. doi: 10.1186/s12864-016-2944-3. BMC Genomics. 2016. PMID: 27535656 Free PMC article.

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