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Items: 1 to 20 of 109

1.

Multiple polyploidy events in the early radiation of nodulating and nonnodulating legumes.

Cannon SB, McKain MR, Harkess A, Nelson MN, Dash S, Deyholos MK, Peng Y, Joyce B, Stewart CN Jr, Rolf M, Kutchan T, Tan X, Chen C, Zhang Y, Carpenter E, Wong GK, Doyle JJ, Leebens-Mack J.

Mol Biol Evol. 2015 Jan;32(1):193-210. doi: 10.1093/molbev/msu296. Epub 2014 Oct 27.

2.

Polyploidy did not predate the evolution of nodulation in all legumes.

Cannon SB, Ilut D, Farmer AD, Maki SL, May GD, Singer SR, Doyle JJ.

PLoS One. 2010 Jul 16;5(7):e11630. doi: 10.1371/journal.pone.0011630.

3.

Comparative genomics suggests that an ancestral polyploidy event leads to enhanced root nodule symbiosis in the Papilionoideae.

Li QG, Zhang L, Li C, Dunwell JM, Zhang YM.

Mol Biol Evol. 2013 Dec;30(12):2602-11. doi: 10.1093/molbev/mst152. Epub 2013 Sep 4.

PMID:
24008584
4.

Revisiting the phylogeny of papilionoid legumes: New insights from comprehensively sampled early-branching lineages.

Cardoso D, de Queiroz LP, Pennington RT, de Lima HC, Fonty E, Wojciechowski MF, Lavin M.

Am J Bot. 2012 Dec;99(12):1991-2013. doi: 10.3732/ajb.1200380. Epub 2012 Dec 8.

5.

Legume comparative genomics: progress in phylogenetics and phylogenomics.

Cronk Q, Ojeda I, Pennington RT.

Curr Opin Plant Biol. 2006 Apr;9(2):99-103. Epub 2006 Feb 15. Review.

PMID:
16480916
6.

Phylogenetic perspectives on the origins of nodulation.

Doyle JJ.

Mol Plant Microbe Interact. 2011 Nov;24(11):1289-95. doi: 10.1094/MPMI-05-11-0114. Review.

7.

Biogeographical Patterns of Legume-Nodulating Burkholderia spp.: from African Fynbos to Continental Scales.

Lemaire B, Chimphango SB, Stirton C, Rafudeen S, Honnay O, Smets E, Chen WM, Sprent J, James EK, Muasya AM.

Appl Environ Microbiol. 2016 Aug 15;82(17):5099-115. doi: 10.1128/AEM.00591-16. Print 2016 Sep 1.

8.

Evolution of a symbiotic receptor through gene duplications in the legume-rhizobium mutualism.

De Mita S, Streng A, Bisseling T, Geurts R.

New Phytol. 2014 Feb;201(3):961-72. doi: 10.1111/nph.12549. Epub 2013 Oct 28.

9.

A phylogenetic framework of the legume genus Aeschynomene for comparative genetic analysis of the Nod-dependent and Nod-independent symbioses.

Brottier L, Chaintreuil C, Simion P, Scornavacca C, Rivallan R, Mournet P, Moulin L, Lewis GP, Fardoux J, Brown SC, Gomez-Pacheco M, Bourges M, Hervouet C, Gueye M, Duponnois R, Ramanankierana H, Randriambanona H, Vandrot H, Zabaleta M, DasGupta M, D'Hont A, Giraud E, Arrighi JF.

BMC Plant Biol. 2018 Dec 5;18(1):333. doi: 10.1186/s12870-018-1567-z.

10.

An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes.

Bertioli DJ, Moretzsohn MC, Madsen LH, Sandal N, Leal-Bertioli SC, GuimarĂ£es PM, Hougaard BK, Fredslund J, Schauser L, Nielsen AM, Sato S, Tabata S, Cannon SB, Stougaard J.

BMC Genomics. 2009 Jan 23;10:45. doi: 10.1186/1471-2164-10-45.

11.

The evolutionary dynamics of ancient and recent polyploidy in the African semiaquatic species of the legume genus Aeschynomene.

Chaintreuil C, Gully D, Hervouet C, Tittabutr P, Randriambanona H, Brown SC, Lewis GP, Bourge M, Cartieaux F, Boursot M, Ramanankierana H, D'Hont A, Teaumroong N, Giraud E, Arrighi JF.

New Phytol. 2016 Aug;211(3):1077-91. doi: 10.1111/nph.13956. Epub 2016 Apr 7.

12.

Genome-Wide Analysis Indicates Lineage-Specific Gene Loss during Papilionoideae Evolution.

Gu Y, Xing S, He C.

Genome Biol Evol. 2016 Feb 11;8(3):635-48. doi: 10.1093/gbe/evw021.

13.

Molecular systematics of the Amazonian genus Aldina, a phylogenetically enigmatic ectomycorrhizal lineage of papilionoid legumes.

Ramos G, de Lima HC, Prenner G, de Queiroz LP, Zartman CE, Cardoso D.

Mol Phylogenet Evol. 2016 Apr;97:11-18. doi: 10.1016/j.ympev.2015.12.017. Epub 2015 Dec 31.

PMID:
26748266
14.

Phylogeny reconstruction in the Caesalpinieae grade (Leguminosae) based on duplicated copies of the sucrose synthase gene and plastid markers.

Manzanilla V, Bruneau A.

Mol Phylogenet Evol. 2012 Oct;65(1):149-62. doi: 10.1016/j.ympev.2012.05.035. Epub 2012 Jun 12.

PMID:
22699157
15.

The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae.

Doyle JJ, Doyle JL, Ballenger JA, Palmer JD.

Mol Phylogenet Evol. 1996 Apr;5(2):429-38.

PMID:
8728401
16.

Long-term evolution of nucleotide-binding site-leucine-rich repeat genes: understanding gained from and beyond the legume family.

Shao ZQ, Zhang YM, Hang YY, Xue JY, Zhou GC, Wu P, Wu XY, Wu XZ, Wang Q, Wang B, Chen JQ.

Plant Physiol. 2014 Sep;166(1):217-34. doi: 10.1104/pp.114.243626. Epub 2014 Jul 22.

17.

Placing paleopolyploidy in relation to taxon divergence: a phylogenetic analysis in legumes using 39 gene families.

Pfeil BE, Schlueter JA, Shoemaker RC, Doyle JJ.

Syst Biol. 2005 Jun;54(3):441-54.

PMID:
16012110
18.

A phylogeny of the chloroplast gene rbcL in the Leguminosae: taxonomic correlations and insights into the evolution of nodulation.

Doyle J, Doyle J, Ballenger J, Dickson E, Kajita T, Ohashi H.

Am J Bot. 1997 Apr;84(4):541.

19.

Plastome-Wide Nucleotide Substitution Rates Reveal Accelerated Rates in Papilionoideae and Correlations with Genome Features Across Legume Subfamilies.

Schwarz EN, Ruhlman TA, Weng ML, Khiyami MA, Sabir JSM, Hajarah NH, Alharbi NS, Rabah SO, Jansen RK.

J Mol Evol. 2017 Apr;84(4):187-203. doi: 10.1007/s00239-017-9792-x. Epub 2017 Apr 10.

PMID:
28397003
20.

Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.

Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S.

Science. 2018 Jul 13;361(6398). pii: eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24.

PMID:
29794220

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