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Items: 1 to 20 of 70

1.

Cell type-specific affinity purification of nuclei for chromatin profiling in whole animals.

Steiner FA, Henikoff S.

Methods Mol Biol. 2015;1228:3-14. doi: 10.1007/978-1-4939-1680-1_1.

PMID:
25311117
2.

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S.

Genome Res. 2012 Apr;22(4):766-77. doi: 10.1101/gr.131748.111. Epub 2012 Jan 4.

3.

Endosperm-specific chromatin profiling by fluorescence-activated nuclei sorting and ChIP-on-chip.

Weinhofer I, Köhler C.

Methods Mol Biol. 2014;1112:105-15. doi: 10.1007/978-1-62703-773-0_7.

PMID:
24478010
4.

The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana.

Deal RB, Henikoff S.

Nat Protoc. 2011 Jan;6(1):56-68. doi: 10.1038/nprot.2010.175. Epub 2010 Dec 16.

PMID:
21212783
5.

Epigenome profiling of specific plant cell types using a streamlined INTACT protocol and ChIP-seq.

Wang D, Deal RB.

Methods Mol Biol. 2015;1284:3-25. doi: 10.1007/978-1-4939-2444-8_1.

PMID:
25757765
6.

Cell type-specific epigenome profiling using affinity-purified nuclei.

Chitikova Z, Steiner FA.

Genesis. 2016 Apr;54(4):160-9. doi: 10.1002/dvg.22919. Epub 2016 Apr 6. Review.

PMID:
26789661
7.

Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans.

Sha K, Gu SG, Pantalena-Filho LC, Goh A, Fleenor J, Blanchard D, Krishna C, Fire A.

BMC Genomics. 2010 Aug 6;11:465. doi: 10.1186/1471-2164-11-465.

8.
9.

Fluorescence-activated sorting of fixed nuclei: a general method for studying nuclei from specific cell populations that preserves post-translational modifications.

Marion-Poll L, Montalban E, Munier A, Hervé D, Girault JA.

Eur J Neurosci. 2014 Apr;39(7):1234-44. doi: 10.1111/ejn.12506.

PMID:
24713002
10.

Comprehensive single-cell transcriptional profiling of a multicellular organism.

Cao J, Packer JS, Ramani V, Cusanovich DA, Huynh C, Daza R, Qiu X, Lee C, Furlan SN, Steemers FJ, Adey A, Waterston RH, Trapnell C, Shendure J.

Science. 2017 Aug 18;357(6352):661-667. doi: 10.1126/science.aam8940.

11.

Isolation of nuclei for use in genome-wide DNase hypersensitivity assays to probe chromatin structure.

Ling G, Waxman DJ.

Methods Mol Biol. 2013;977:13-9. doi: 10.1007/978-1-62703-284-1_2.

12.

Cell Type-Specific Profiling of Chromatin Modifications and Associated Proteins.

Morao AK, Caillieux E, Colot V, Roudier F.

Methods Mol Biol. 2018;1675:111-130. doi: 10.1007/978-1-4939-7318-7_8.

PMID:
29052189
13.

Analysis of C. elegans intestinal gene expression and polyadenylation by fluorescence-activated nuclei sorting and 3'-end-seq.

Haenni S, Ji Z, Hoque M, Rust N, Sharpe H, Eberhard R, Browne C, Hengartner MO, Mellor J, Tian B, Furger A.

Nucleic Acids Res. 2012 Jul;40(13):6304-18. Epub 2012 Mar 29.

14.

Proteomic profiling of cardiac tissue by isolation of nuclei tagged in specific cell types (INTACT).

Amin NM, Greco TM, Kuchenbrod LM, Rigney MM, Chung MI, Wallingford JB, Cristea IM, Conlon FL.

Development. 2014 Feb;141(4):962-73. doi: 10.1242/dev.098327.

15.

Comprehensive single cell-resolution analysis of the role of chromatin regulators in early C. elegans embryogenesis.

Krüger AV, Jelier R, Dzyubachyk O, Zimmerman T, Meijering E, Lehner B.

Dev Biol. 2015 Feb 15;398(2):153-62. doi: 10.1016/j.ydbio.2014.10.014. Epub 2014 Oct 28.

16.

Cell type-specific genomics of Drosophila neurons.

Henry GL, Davis FP, Picard S, Eddy SR.

Nucleic Acids Res. 2012 Oct;40(19):9691-704. doi: 10.1093/nar/gks671. Epub 2012 Aug 1.

17.

Chromatin immunoprecipitation assay of brain tissues using Percoll gradient-purified nuclei.

Ding B, Kilpatrick DL.

Methods Mol Biol. 2013;1018:199-209. doi: 10.1007/978-1-62703-444-9_19.

PMID:
23681630
18.

Chromatin-nuclear envelope complex from rat liver: isolation and purification.

Prusov AN, Fais D, Polyakov VY, Vanyushin BF.

Cell Biol Int Rep. 1980 Apr;4(4):391-8.

PMID:
6156014
19.

Isolation and functional analysis of mitochondria from the nematode Caenorhabditis elegans.

Grad LI, Sayles LC, Lemire BD.

Methods Mol Biol. 2007;372:51-66. doi: 10.1007/978-1-59745-365-3_4.

PMID:
18314717
20.

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