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Items: 1 to 20 of 80

1.

A general sequence processing and analysis program for protein engineering.

Stafford RL, Zimmerman ES, Hallam TJ, Sato AK.

J Chem Inf Model. 2014 Oct 27;54(10):3020-32. doi: 10.1021/ci500362s. Epub 2014 Oct 3.

2.

LUCY2: an interactive DNA sequence quality trimming and vector removal tool.

Li S, Chou HH.

Bioinformatics. 2004 Nov 1;20(16):2865-6. Epub 2004 May 6.

PMID:
15130926
3.
4.

POWER: PhylOgenetic WEb Repeater--an integrated and user-optimized framework for biomolecular phylogenetic analysis.

Lin CY, Lin FK, Lin CH, Lai LW, Hsu HJ, Chen SH, Hsiung CA.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W553-6.

5.

Spreadsheet-based program for alignment of overlapping DNA sequences.

Anbazhagan R, Gabrielson E.

Biotechniques. 1999 Jun;26(6):1180-5.

6.

preAssemble: a tool for automatic sequencer trace data processing.

Adzhubei AA, Laerdahl JK, Vlasova AV.

BMC Bioinformatics. 2006 Jan 17;7:22.

7.

Tablet--next generation sequence assembly visualization.

Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D.

Bioinformatics. 2010 Feb 1;26(3):401-2. doi: 10.1093/bioinformatics/btp666. Epub 2009 Dec 4.

8.

SraTailor: graphical user interface software for processing and visualizing ChIP-seq data.

Oki S, Maehara K, Ohkawa Y, Meno C.

Genes Cells. 2014 Dec;19(12):919-26. doi: 10.1111/gtc.12190. Epub 2014 Oct 17.

9.
10.

SNP-PHAGE--High throughput SNP discovery pipeline.

Matukumalli LK, Grefenstette JJ, Hyten DL, Choi IY, Cregan PB, Van Tassell CP.

BMC Bioinformatics. 2006 Oct 23;7:468.

11.

CGKB: an annotation knowledge base for cowpea (Vigna unguiculata L.) methylation filtered genomic genespace sequences.

Chen X, Laudeman TW, Rushton PJ, Spraggins TA, Timko MP.

BMC Bioinformatics. 2007 Apr 19;8:129.

12.

YASS: enhancing the sensitivity of DNA similarity search.

Noé L, Kucherov G.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W540-3.

13.

GATA: a graphic alignment tool for comparative sequence analysis.

Nix DA, Eisen MB.

BMC Bioinformatics. 2005 Jan 17;6:9.

14.

AssociationDB: web-based exploration of genomic association.

Seelow D, Hoffmann K, Lindner TH.

Bioinformatics. 2007 Oct 1;23(19):2643-4. Epub 2007 Jul 27.

PMID:
17660207
15.

OrchidBase: a collection of sequences of the transcriptome derived from orchids.

Fu CH, Chen YW, Hsiao YY, Pan ZJ, Liu ZJ, Huang YM, Tsai WC, Chen HH.

Plant Cell Physiol. 2011 Feb;52(2):238-43. doi: 10.1093/pcp/pcq201. Epub 2011 Jan 17.

PMID:
21245031
16.

An integrated web interface for large-scale characterization of sequence data.

Cheung KH, Kumar A, Snyder M, Miller P.

Funct Integr Genomics. 2000 May;1(1):70-5.

PMID:
11793223
17.
18.

Generation of artificial FASTQ files to evaluate the performance of next-generation sequencing pipelines.

Frampton M, Houlston R.

PLoS One. 2012;7(11):e49110. doi: 10.1371/journal.pone.0049110. Epub 2012 Nov 12.

19.

QDD: a user-friendly program to select microsatellite markers and design primers from large sequencing projects.

Meglécz E, Costedoat C, Dubut V, Gilles A, Malausa T, Pech N, Martin JF.

Bioinformatics. 2010 Feb 1;26(3):403-4. doi: 10.1093/bioinformatics/btp670. Epub 2009 Dec 10.

PMID:
20007741
20.

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