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Items: 1 to 20 of 63

1.

VirusMentha: a new resource for virus-host protein interactions.

Calderone A, Licata L, Cesareni G.

Nucleic Acids Res. 2015 Jan;43(Database issue):D588-92. doi: 10.1093/nar/gku830. Epub 2014 Sep 12.

2.

VirusMINT: a viral protein interaction database.

Chatr-aryamontri A, Ceol A, Peluso D, Nardozza A, Panni S, Sacco F, Tinti M, Smolyar A, Castagnoli L, Vidal M, Cusick ME, Cesareni G.

Nucleic Acids Res. 2009 Jan;37(Database issue):D669-73. doi: 10.1093/nar/gkn739. Epub 2008 Oct 30.

3.

VirHostNet 2.0: surfing on the web of virus/host molecular interactions data.

Guirimand T, Delmotte S, Navratil V.

Nucleic Acids Res. 2015 Jan;43(Database issue):D583-7. doi: 10.1093/nar/gku1121. Epub 2014 Nov 11.

4.

VirHostNet: a knowledge base for the management and the analysis of proteome-wide virus-host interaction networks.

Navratil V, de Chassey B, Meyniel L, Delmotte S, Gautier C, André P, Lotteau V, Rabourdin-Combe C.

Nucleic Acids Res. 2009 Jan;37(Database issue):D661-8. doi: 10.1093/nar/gkn794. Epub 2008 Nov 4.

5.

The IntAct molecular interaction database in 2012.

Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, Duesbury M, Dumousseau M, Feuermann M, Hinz U, Jandrasits C, Jimenez RC, Khadake J, Mahadevan U, Masson P, Pedruzzi I, Pfeiffenberger E, Porras P, Raghunath A, Roechert B, Orchard S, Hermjakob H.

Nucleic Acids Res. 2012 Jan;40(Database issue):D841-6. doi: 10.1093/nar/gkr1088. Epub 2011 Nov 24.

6.

MINT, the molecular interaction database: 2012 update.

Licata L, Briganti L, Peluso D, Perfetto L, Iannuccelli M, Galeota E, Sacco F, Palma A, Nardozza AP, Santonico E, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2012 Jan;40(Database issue):D857-61. doi: 10.1093/nar/gkr930. Epub 2011 Nov 16.

7.

Discovery of host-viral protein complexes during infection.

Rowles DL, Terhune SS, Cristea IM.

Methods Mol Biol. 2013;1064:43-70. doi: 10.1007/978-1-62703-601-6_4.

8.

Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource.

Druce M, Hulo C, Masson P, Sommer P, Xenarios I, Le Mercier P, De Oliveira T.

Database (Oxford). 2016 Apr 17;2016. pii: baw045. doi: 10.1093/database/baw045. Print 2016.

9.

A viral-human interactome based on structural motif-domain interactions captures the human infectome.

Segura-Cabrera A, García-Pérez CA, Guo X, Rodríguez-Pérez MA.

PLoS One. 2013 Aug 8;8(8):e71526. doi: 10.1371/journal.pone.0071526. eCollection 2013.

10.

Bioinformatics databases and tools in virology research: an overview.

Yan Q.

In Silico Biol. 2008;8(2):71-85. Review.

PMID:
18928197
11.

MINT: the Molecular INTeraction database.

Chatr-aryamontri A, Ceol A, Palazzi LM, Nardelli G, Schneider MV, Castagnoli L, Cesareni G.

Nucleic Acids Res. 2007 Jan;35(Database issue):D572-4. Epub 2006 Nov 29.

12.

HCVpro: hepatitis C virus protein interaction database.

Kwofie SK, Schaefer U, Sundararajan VS, Bajic VB, Christoffels A.

Infect Genet Evol. 2011 Dec;11(8):1971-7. doi: 10.1016/j.meegid.2011.09.001. Epub 2011 Sep 9.

PMID:
21930248
13.

MatrixDB, the extracellular matrix interaction database.

Chautard E, Fatoux-Ardore M, Ballut L, Thierry-Mieg N, Ricard-Blum S.

Nucleic Acids Res. 2011 Jan;39(Database issue):D235-40. doi: 10.1093/nar/gkq830. Epub 2010 Sep 17.

15.

Molecular interaction databases.

Orchard S.

Proteomics. 2012 May;12(10):1656-62. doi: 10.1002/pmic.201100484. Review.

PMID:
22611057
16.

The MIntAct project--IntAct as a common curation platform for 11 molecular interaction databases.

Orchard S, Ammari M, Aranda B, Breuza L, Briganti L, Broackes-Carter F, Campbell NH, Chavali G, Chen C, del-Toro N, Duesbury M, Dumousseau M, Galeota E, Hinz U, Iannuccelli M, Jagannathan S, Jimenez R, Khadake J, Lagreid A, Licata L, Lovering RC, Meldal B, Melidoni AN, Milagros M, Peluso D, Perfetto L, Porras P, Raghunath A, Ricard-Blum S, Roechert B, Stutz A, Tognolli M, van Roey K, Cesareni G, Hermjakob H.

Nucleic Acids Res. 2014 Jan;42(Database issue):D358-63. doi: 10.1093/nar/gkt1115. Epub 2013 Nov 13.

17.

Viruses and interactomes in translation.

Meyniel-Schicklin L, de Chassey B, André P, Lotteau V.

Mol Cell Proteomics. 2012 Jul;11(7):M111.014738. doi: 10.1074/mcp.M111.014738. Epub 2012 Feb 27.

18.

Patterns of HIV-1 protein interaction identify perturbed host-cellular subsystems.

MacPherson JI, Dickerson JE, Pinney JW, Robertson DL.

PLoS Comput Biol. 2010 Jul 29;6(7):e1000863. doi: 10.1371/journal.pcbi.1000863.

19.

Identification of new protein interactions between dengue fever virus and its hosts, human and mosquito.

Mairiang D, Zhang H, Sodja A, Murali T, Suriyaphol P, Malasit P, Limjindaporn T, Finley RL Jr.

PLoS One. 2013;8(1):e53535. doi: 10.1371/journal.pone.0053535. Epub 2013 Jan 11.

20.

VIP DB--a viral protein domain usage and distribution database.

Chen TW, Gan RR, Wu TH, Lin WC, Tang P.

Genomics. 2012 Sep;100(3):149-56. doi: 10.1016/j.ygeno.2012.06.008. Epub 2012 Jun 24.

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