Similar articles for PMID: 25161241

Year	Number of Results
1997	1
1999	2
2000	2
2001	2
2002	3
2003	4
2004	7
2005	4
2006	8
2007	5
2008	6
2009	2
2010	4
2011	7
2012	9
2013	3
2014	6
2015	7
2016	5
2017	2
2018	3
2019	4
2020	2
2021	3
2023	1
2024	0

1

A new statistical framework to assess structural alignment quality using information compression.

Collier JH, Allison L, Lesk AM, Garcia de la Banda M, Konagurthu AS. Collier JH, et al. Bioinformatics. 2014 Sep 1;30(17):i512-8. doi: 10.1093/bioinformatics/btu460. Bioinformatics. 2014. PMID: 25161241 Free PMC article.

2

Statistical inference of protein structural alignments using information and compression.

Collier JH, Allison L, Lesk AM, Stuckey PJ, Garcia de la Banda M, Konagurthu AS. Collier JH, et al. Bioinformatics. 2017 Apr 1;33(7):1005-1013. doi: 10.1093/bioinformatics/btw757. Bioinformatics. 2017. PMID: 28065899

3

Statistical compression of protein sequences and inference of marginal probability landscapes over competing alignments using finite state models and Dirichlet priors.

Sumanaweera D, Allison L, Konagurthu AS. Sumanaweera D, et al. Bioinformatics. 2019 Jul 15;35(14):i360-i369. doi: 10.1093/bioinformatics/btz368. Bioinformatics. 2019. PMID: 31510703 Free PMC article.

4

Information-Theoretic Inference of an Optimal Dictionary of Protein Supersecondary Structures.

Konagurthu AS, Subramanian R, Allison L, Abramson D, de la Banda MG, Stuckey PJ, Lesk AM. Konagurthu AS, et al. Methods Mol Biol. 2019;1958:123-131. doi: 10.1007/978-1-4939-9161-7_6. Methods Mol Biol. 2019. PMID: 30945216

5

A genome alignment algorithm based on compression.

Cao MD, Dix TI, Allison L. Cao MD, et al. BMC Bioinformatics. 2010 Dec 16;11:599. doi: 10.1186/1471-2105-11-599. BMC Bioinformatics. 2010. PMID: 21159205 Free PMC article.

6

Fr-TM-align: a new protein structural alignment method based on fragment alignments and the TM-score.

Pandit SB, Skolnick J. Pandit SB, et al. BMC Bioinformatics. 2008 Dec 12;9:531. doi: 10.1186/1471-2105-9-531. BMC Bioinformatics. 2008. PMID: 19077267 Free PMC article.

7

Towards the development of standardized methods for comparison, ranking and evaluation of structure alignments.

Slater AW, Castellanos JI, Sippl MJ, Melo F. Slater AW, et al. Bioinformatics. 2013 Jan 1;29(1):47-53. doi: 10.1093/bioinformatics/bts600. Epub 2012 Oct 11. Bioinformatics. 2013. PMID: 23060612

8

Integrated search and alignment of protein structures.

Sacan A, Toroslu IH, Ferhatosmanoglu H. Sacan A, et al. Bioinformatics. 2008 Dec 15;24(24):2872-9. doi: 10.1093/bioinformatics/btn545. Epub 2008 Oct 22. Bioinformatics. 2008. PMID: 18945684

9

Statistical evaluation and comparison of a pairwise alignment algorithm that a priori assigns the number of gaps rather than employing gap penalties.

Nozaki Y, Bellgard M. Nozaki Y, et al. Bioinformatics. 2005 Apr 15;21(8):1421-8. doi: 10.1093/bioinformatics/bti198. Epub 2004 Dec 10. Bioinformatics. 2005. PMID: 15591359

10

SAD--a normalized structural alignment database: improving sequence-structure alignments.

Marsden B, Abagyan R. Marsden B, et al. Bioinformatics. 2004 Oct 12;20(15):2333-44. doi: 10.1093/bioinformatics/bth244. Epub 2004 Apr 15. Bioinformatics. 2004. PMID: 15087320

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