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Items: 1 to 20 of 345

1.

GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry.

He L, Xin L, Shan B, Lajoie GA, Ma B.

J Proteome Res. 2014 Sep 5;13(9):3881-95. doi: 10.1021/pr401115y.

PMID:
25113421
2.

GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides.

Toghi Eshghi S, Shah P, Yang W, Li X, Zhang H.

Anal Chem. 2015;87(10):5181-8. doi: 10.1021/acs.analchem.5b00024.

3.
4.

GlycanAnalysis Plug-in: a database search tool for N-glycan structures using mass spectrometry.

Morimoto K, Nishikaze T, Yoshizawa AC, Kajihara S, Aoshima K, Oda Y, Tanaka K.

Bioinformatics. 2015 Jul 1;31(13):2217-9. doi: 10.1093/bioinformatics/btv110.

5.

Characterization of intact N- and O-linked glycopeptides using higher energy collisional dissociation.

Cao L, Tolić N, Qu Y, Meng D, Zhao R, Zhang Q, Moore RJ, Zink EM, Lipton MS, Paša-Tolić L, Wu S.

Anal Biochem. 2014 May 1;452:96-102. doi: 10.1016/j.ab.2014.01.003.

PMID:
24440233
6.

PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.

Nanni P, Panse C, Gehrig P, Mueller S, Grossmann J, Schlapbach R.

Proteomics. 2013 Aug;13(15):2251-5. doi: 10.1002/pmic.201300036.

PMID:
23713006
7.

Glycoproteomics based on tandem mass spectrometry of glycopeptides.

Wuhrer M, Catalina MI, Deelder AM, Hokke CH.

J Chromatogr B Analyt Technol Biomed Life Sci. 2007 Apr 15;849(1-2):115-28. Review.

PMID:
17049937
8.

MAGIC: an automated N-linked glycoprotein identification tool using a Y1-ion pattern matching algorithm and in silico MS² approach.

Lynn KS, Chen CC, Lih TM, Cheng CW, Su WC, Chang CH, Cheng CY, Hsu WL, Chen YJ, Sung TY.

Anal Chem. 2015 Feb 17;87(4):2466-73. doi: 10.1021/ac5044829.

PMID:
25629585
9.

Large-scale characterization of intact N-glycopeptides using an automated glycoproteomic method.

Cheng K, Chen R, Seebun D, Ye M, Figeys D, Zou H.

J Proteomics. 2014 Oct 14;110:145-54. doi: 10.1016/j.jprot.2014.08.006.

PMID:
25182382
10.

Human urinary glycoproteomics; attachment site specific analysis of N- and O-linked glycosylations by CID and ECD.

Halim A, Nilsson J, Rüetschi U, Hesse C, Larson G.

Mol Cell Proteomics. 2012 Apr;11(4):M111.013649. doi: 10.1074/mcp.M111.013649.

11.

Tools for glycoproteomic analysis: size exclusion chromatography facilitates identification of tryptic glycopeptides with N-linked glycosylation sites.

Alvarez-Manilla G, Atwood J 3rd, Guo Y, Warren NL, Orlando R, Pierce M.

J Proteome Res. 2006 Mar;5(3):701-8.

PMID:
16512686
12.

Exploring site-specific N-glycosylation microheterogeneity of haptoglobin using glycopeptide CID tandem mass spectra and glycan database search.

Chandler KB, Pompach P, Goldman R, Edwards N.

J Proteome Res. 2013 Aug 2;12(8):3652-66. doi: 10.1021/pr400196s.

13.

N-glycan occupancy of Arabidopsis N-glycoproteins.

Song W, Mentink RA, Henquet MG, Cordewener JH, van Dijk AD, Bosch D, America AH, van der Krol AR.

J Proteomics. 2013 Nov 20;93:343-55. doi: 10.1016/j.jprot.2013.07.032.

PMID:
23994444
14.

Glycoform analysis of recombinant and human immunodeficiency virus envelope protein gp120 via higher energy collisional dissociation and spectral-aligning strategy.

Yang W, Shah P, Toghi Eshghi S, Yang S, Sun S, Ao M, Rubin A, Jackson JB, Zhang H.

Anal Chem. 2014 Jul 15;86(14):6959-67. doi: 10.1021/ac500876p.

15.

Identification of Glycopeptides with Multiple Hydroxylysine O-Glycosylation Sites by Tandem Mass Spectrometry.

Zhang Y, Yu CY, Song E, Li SC, Mechref Y, Tang H, Liu X.

J Proteome Res. 2015 Dec 4;14(12):5099-108. doi: 10.1021/acs.jproteome.5b00299.

PMID:
26565680
17.

Sialic acid capture-and-release and LC-MS(n) analysis of glycopeptides.

Nilsson J, Larson G.

Methods Mol Biol. 2013;951:79-100. doi: 10.1007/978-1-62703-146-2_7.

PMID:
23296526
18.

Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity.

Mayampurath AM, Wu Y, Segu ZM, Mechref Y, Tang H.

Rapid Commun Mass Spectrom. 2011 Jul 30;25(14):2007-19. doi: 10.1002/rcm.5059.

PMID:
21698683
19.

Use of CID/ETD mass spectrometry to analyze glycopeptides.

Mechref Y.

Curr Protoc Protein Sci. 2012 Apr;Chapter 12:Unit 12.11.1-11. doi: 10.1002/0471140864.ps1211s68.

20.

Site-specific characterisation of densely O-glycosylated mucin-type peptides using electron transfer dissociation ESI-MS/MS.

Thaysen-Andersen M, Wilkinson BL, Payne RJ, Packer NH.

Electrophoresis. 2011 Dec;32(24):3536-45. doi: 10.1002/elps.201100294.

PMID:
22180206
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