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Items: 1 to 20 of 88

1.

High-resolution prediction of mouse brain connectivity using gene expression patterns.

Fakhry A, Ji S.

Methods. 2015 Feb;73:71-8. doi: 10.1016/j.ymeth.2014.07.011. Epub 2014 Aug 7.

PMID:
25109429
2.

Integrative analysis of the connectivity and gene expression atlases in the mouse brain.

Ji S, Fakhry A, Deng H.

Neuroimage. 2014 Jan 1;84:245-53. doi: 10.1016/j.neuroimage.2013.08.049. Epub 2013 Sep 1.

PMID:
24004696
3.

Neuroinformatics of the Allen Mouse Brain Connectivity Atlas.

Kuan L, Li Y, Lau C, Feng D, Bernard A, Sunkin SM, Zeng H, Dang C, Hawrylycz M, Ng L.

Methods. 2015 Feb;73:4-17. doi: 10.1016/j.ymeth.2014.12.013. Epub 2014 Dec 20. Review.

4.

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings.

Mahfouz A, van de Giessen M, van der Maaten L, Huisman S, Reinders M, Hawrylycz MJ, Lelieveldt BP.

Methods. 2015 Feb;73:79-89. doi: 10.1016/j.ymeth.2014.10.004. Epub 2014 Oct 16.

5.

Exploration and visualization of connectivity in the adult mouse brain.

Feng D, Lau C, Ng L, Li Y, Kuan L, Sunkin SM, Dang C, Hawrylycz M.

Methods. 2015 Feb;73:90-7. doi: 10.1016/j.ymeth.2015.01.009. Epub 2015 Jan 27.

PMID:
25637033
6.

Construct and assess multimodal mouse brain connectomes via joint modeling of multi-scale DTI and neuron tracer data.

Chen H, Zhao Y, Zhang T, Zhang H, Kuang H, Li M, Tsien JZ, Liu T.

Med Image Comput Comput Assist Interv. 2014;17(Pt 3):273-80.

PMID:
25320809
7.

A mesoscale connectome of the mouse brain.

Oh SW, Harris JA, Ng L, Winslow B, Cain N, Mihalas S, Wang Q, Lau C, Kuan L, Henry AM, Mortrud MT, Ouellette B, Nguyen TN, Sorensen SA, Slaughterbeck CR, Wakeman W, Li Y, Feng D, Ho A, Nicholas E, Hirokawa KE, Bohn P, Joines KM, Peng H, Hawrylycz MJ, Phillips JW, Hohmann JG, Wohnoutka P, Gerfen CR, Koch C, Bernard A, Dang C, Jones AR, Zeng H.

Nature. 2014 Apr 10;508(7495):207-14. doi: 10.1038/nature13186. Epub 2014 Apr 2.

8.

Relationships between gene expression and brain wiring in the adult rodent brain.

French L, Pavlidis P.

PLoS Comput Biol. 2011 Jan 6;7(1):e1001049. doi: 10.1371/journal.pcbi.1001049.

9.

The parcellation-based connectome: limitations and extensions.

de Reus MA, van den Heuvel MP.

Neuroimage. 2013 Oct 15;80:397-404. doi: 10.1016/j.neuroimage.2013.03.053. Epub 2013 Apr 1. Review.

PMID:
23558097
10.

Detection of functional connectivity in the resting mouse brain.

Nasrallah FA, Tay HC, Chuang KH.

Neuroimage. 2014 Feb 1;86:417-24. doi: 10.1016/j.neuroimage.2013.10.025. Epub 2013 Oct 22.

PMID:
24157920
11.

Microstructural grey matter parcellation and its relevance for connectome analyses.

Caspers S, Eickhoff SB, Zilles K, Amunts K.

Neuroimage. 2013 Oct 15;80:18-26. doi: 10.1016/j.neuroimage.2013.04.003. Epub 2013 Apr 6.

PMID:
23571419
12.

Fine-grained mapping of mouse brain functional connectivity with resting-state fMRI.

Mechling AE, Hübner NS, Lee HL, Hennig J, von Elverfeldt D, Harsan LA.

Neuroimage. 2014 Aug 1;96:203-15. doi: 10.1016/j.neuroimage.2014.03.078. Epub 2014 Apr 6.

PMID:
24718287
13.

Network centrality in the human functional connectome.

Zuo XN, Ehmke R, Mennes M, Imperati D, Castellanos FX, Sporns O, Milham MP.

Cereb Cortex. 2012 Aug;22(8):1862-75. doi: 10.1093/cercor/bhr269. Epub 2011 Oct 2.

PMID:
21968567
14.

Transcriptional profiles of supragranular-enriched genes associate with corticocortical network architecture in the human brain.

Krienen FM, Yeo BT, Ge T, Buckner RL, Sherwood CC.

Proc Natl Acad Sci U S A. 2016 Jan 26;113(4):E469-78. doi: 10.1073/pnas.1510903113. Epub 2016 Jan 6.

15.

Gene expression in the rodent brain is associated with its regional connectivity.

Wolf L, Goldberg C, Manor N, Sharan R, Ruppin E.

PLoS Comput Biol. 2011 May;7(5):e1002040. doi: 10.1371/journal.pcbi.1002040. Epub 2011 May 5.

16.

An anatomic gene expression atlas of the adult mouse brain.

Ng L, Bernard A, Lau C, Overly CC, Dong HW, Kuan C, Pathak S, Sunkin SM, Dang C, Bohland JW, Bokil H, Mitra PP, Puelles L, Hohmann J, Anderson DJ, Lein ES, Jones AR, Hawrylycz M.

Nat Neurosci. 2009 Mar;12(3):356-62. doi: 10.1038/nn.2281. Epub 2009 Feb 15.

PMID:
19219037
17.

The Allen Brain Atlas: 5 years and beyond.

Jones AR, Overly CC, Sunkin SM.

Nat Rev Neurosci. 2009 Nov;10(11):821-8. doi: 10.1038/nrn2722. Epub 2009 Oct 14. Review.

PMID:
19826436
18.

Large-Scale Analysis of Gene Expression and Connectivity in the Rodent Brain: Insights through Data Integration.

French L, Tan PP, Pavlidis P.

Front Neuroinform. 2011 Jul 29;5:12. doi: 10.3389/fninf.2011.00012. eCollection 2011.

19.

Allen mouse brain atlases reveal different neural connection and gene expression patterns in cerebellum gyri and sulci.

Zeng T, Chen H, Fakhry A, Hu X, Liu T, Ji S.

Brain Struct Funct. 2015 Sep;220(5):2691-703. doi: 10.1007/s00429-014-0821-x. Epub 2014 Jun 27.

PMID:
24969129
20.

Multi-scale correlation structure of gene expression in the brain.

Hawrylycz M, Ng L, Page D, Morris J, Lau C, Faber S, Faber V, Sunkin S, Menon V, Lein E, Jones A.

Neural Netw. 2011 Nov;24(9):933-42. doi: 10.1016/j.neunet.2011.06.012. Epub 2011 Jun 25.

PMID:
21764550

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