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Items: 1 to 20 of 111

1.

SciClone: inferring clonal architecture and tracking the spatial and temporal patterns of tumor evolution.

Miller CA, White BS, Dees ND, Griffith M, Welch JS, Griffith OL, Vij R, Tomasson MH, Graubert TA, Walter MJ, Ellis MJ, Schierding W, DiPersio JF, Ley TJ, Mardis ER, Wilson RK, Ding L.

PLoS Comput Biol. 2014 Aug 7;10(8):e1003665. doi: 10.1371/journal.pcbi.1003665. eCollection 2014 Aug.

2.

Single-cell genotyping demonstrates complex clonal diversity in acute myeloid leukemia.

Paguirigan AL, Smith J, Meshinchi S, Carroll M, Maley C, Radich JP.

Sci Transl Med. 2015 Apr 1;7(281):281re2. doi: 10.1126/scitranslmed.aaa0763.

3.

Inferring clonal evolution of tumors from single nucleotide somatic mutations.

Jiao W, Vembu S, Deshwar AG, Stein L, Morris Q.

BMC Bioinformatics. 2014 Feb 1;15:35. doi: 10.1186/1471-2105-15-35.

4.

SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.

Niknafs N, Beleva-Guthrie V, Naiman DQ, Karchin R.

PLoS Comput Biol. 2015 Oct 5;11(10):e1004416. doi: 10.1371/journal.pcbi.1004416. eCollection 2015 Oct.

5.

Reconstruction of clonal trees and tumor composition from multi-sample sequencing data.

El-Kebir M, Oesper L, Acheson-Field H, Raphael BJ.

Bioinformatics. 2015 Jun 15;31(12):i62-70. doi: 10.1093/bioinformatics/btv261.

6.

Clonal evolution of acute leukemia genomes.

Jan M, Majeti R.

Oncogene. 2013 Jan 10;32(2):135-40. doi: 10.1038/onc.2012.48. Epub 2012 Feb 20. Review.

PMID:
22349821
7.

Clonal evolution revealed by whole genome sequencing in a case of primary myelofibrosis transformed to secondary acute myeloid leukemia.

Engle EK, Fisher DA, Miller CA, McLellan MD, Fulton RS, Moore DM, Wilson RK, Ley TJ, Oh ST.

Leukemia. 2015 Apr;29(4):869-76. doi: 10.1038/leu.2014.289. Epub 2014 Sep 25.

8.

[Leukemia stem cell and clonal evolution].

Yoshimi A, Kurokawa M.

Nihon Rinsho. 2014 Jun;72(6):1012-7. Japanese.

PMID:
25016797
9.

Functional heterogeneity of genetically defined subclones in acute myeloid leukemia.

Klco JM, Spencer DH, Miller CA, Griffith M, Lamprecht TL, O'Laughlin M, Fronick C, Magrini V, Demeter RT, Fulton RS, Eades WC, Link DC, Graubert TA, Walter MJ, Mardis ER, Dipersio JF, Wilson RK, Ley TJ.

Cancer Cell. 2014 Mar 17;25(3):379-92. doi: 10.1016/j.ccr.2014.01.031. Epub 2014 Mar 6.

10.

Intra-tumor genetic heterogeneity in rectal cancer.

Hardiman KM, Ulintz PJ, Kuick RD, Hovelson DH, Gates CM, Bhasi A, Rodrigues Grant A, Liu J, Cani AK, Greenson JK, Tomlins SA, Fearon ER.

Lab Invest. 2016 Jan;96(1):4-15. doi: 10.1038/labinvest.2015.131. Epub 2015 Nov 16.

11.

Acute myeloid leukaemia: a paradigm for the clonal evolution of cancer?

Grove CS, Vassiliou GS.

Dis Model Mech. 2014 Aug;7(8):941-51. doi: 10.1242/dmm.015974. Review.

12.

Clonality inference in multiple tumor samples using phylogeny.

Malikic S, McPherson AW, Donmez N, Sahinalp CS.

Bioinformatics. 2015 May 1;31(9):1349-56. doi: 10.1093/bioinformatics/btv003. Epub 2015 Jan 6.

PMID:
25568283
13.

Clonal architecture of secondary acute myeloid leukemia defined by single-cell sequencing.

Hughes AE, Magrini V, Demeter R, Miller CA, Fulton R, Fulton LL, Eades WC, Elliott K, Heath S, Westervelt P, Ding L, Conrad DF, White BS, Shao J, Link DC, DiPersio JF, Mardis ER, Wilson RK, Ley TJ, Walter MJ, Graubert TA.

PLoS Genet. 2014 Jul 10;10(7):e1004462. doi: 10.1371/journal.pgen.1004462. eCollection 2014 Jul.

14.

OncoNEM: inferring tumor evolution from single-cell sequencing data.

Ross EM, Markowetz F.

Genome Biol. 2016 Apr 15;17:69. doi: 10.1186/s13059-016-0929-9.

15.

Clonal dynamics in a single AML case tracked for 9 years reveals the complexity of leukemia progression.

Kim T, Yoshida K, Kim YK, Tyndel MS, Park HJ, Choi SH, Ahn JS, Jung SH, Yang DH, Lee JJ, Kim HJ, Kong G, Ogawa S, Zhang Z, Kim HJ, Kim DD.

Leukemia. 2016 Feb;30(2):295-302. doi: 10.1038/leu.2015.264. Epub 2015 Oct 1.

PMID:
26424407
16.

High-definition reconstruction of clonal composition in cancer.

Fischer A, Vázquez-García I, Illingworth CJ, Mustonen V.

Cell Rep. 2014 Jun 12;7(5):1740-52. doi: 10.1016/j.celrep.2014.04.055. Epub 2014 May 29.

17.

Advances for studying clonal evolution in cancer.

Ding L, Raphael BJ, Chen F, Wendl MC.

Cancer Lett. 2013 Nov 1;340(2):212-9. doi: 10.1016/j.canlet.2012.12.028. Epub 2013 Jan 23. Review.

18.

Clonal evolution in relapsed NPM1-mutated acute myeloid leukemia.

Krönke J, Bullinger L, Teleanu V, Tschürtz F, Gaidzik VI, Kühn MW, Rücker FG, Holzmann K, Paschka P, Kapp-Schwörer S, Späth D, Kindler T, Schittenhelm M, Krauter J, Ganser A, Göhring G, Schlegelberger B, Schlenk RF, Döhner H, Döhner K.

Blood. 2013 Jul 4;122(1):100-8. doi: 10.1182/blood-2013-01-479188. Epub 2013 May 23.

19.

Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

Ding L, Ley TJ, Larson DE, Miller CA, Koboldt DC, Welch JS, Ritchey JK, Young MA, Lamprecht T, McLellan MD, McMichael JF, Wallis JW, Lu C, Shen D, Harris CC, Dooling DJ, Fulton RS, Fulton LL, Chen K, Schmidt H, Kalicki-Veizer J, Magrini VJ, Cook L, McGrath SD, Vickery TL, Wendl MC, Heath S, Watson MA, Link DC, Tomasson MH, Shannon WD, Payton JE, Kulkarni S, Westervelt P, Walter MJ, Graubert TA, Mardis ER, Wilson RK, DiPersio JF.

Nature. 2012 Jan 11;481(7382):506-10. doi: 10.1038/nature10738.

20.

Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia.

Ma X, Edmonson M, Yergeau D, Muzny DM, Hampton OA, Rusch M, Song G, Easton J, Harvey RC, Wheeler DA, Ma J, Doddapaneni H, Vadodaria B, Wu G, Nagahawatte P, Carroll WL, Chen IM, Gastier-Foster JM, Relling MV, Smith MA, Devidas M, Guidry Auvil JM, Downing JR, Loh ML, Willman CL, Gerhard DS, Mullighan CG, Hunger SP, Zhang J.

Nat Commun. 2015 Mar 19;6:6604. doi: 10.1038/ncomms7604.

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