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Items: 1 to 20 of 157

1.

Open reading frames associated with cancer in the dark matter of the human genome.

Delgado AP, Brandao P, Chapado MJ, Hamid S, Narayanan R.

Cancer Genomics Proteomics. 2014 Jul-Aug;11(4):201-13.

PMID:
25048349
2.

Druggable cancer secretome: neoplasm-associated traits.

Narayanan R.

Cancer Genomics Proteomics. 2015 May-Jun;12(3):119-31.

PMID:
25977171
3.

Phenome-genome association studies of pancreatic cancer: new targets for therapy and diagnosis.

Narayanan R.

Cancer Genomics Proteomics. 2015 Jan-Feb;12(1):9-19.

PMID:
25560640
4.

A novel transmembrane glycoprotein cancer biomarker present in the X chromosome.

Delgado AP, Hamid S, Brandao P, Narayanan R.

Cancer Genomics Proteomics. 2014 Mar-Apr;11(2):81-92.

PMID:
24709545
5.

Use of genome-wide association studies for cancer research and drug repositioning.

Zhang J, Jiang K, Lv L, Wang H, Shen Z, Gao Z, Wang B, Yang Y, Ye Y, Wang S.

PLoS One. 2015 Mar 24;10(3):e0116477. doi: 10.1371/journal.pone.0116477. eCollection 2015.

6.

Gene model detection using mass spectrometry.

Nanduri B, Wang N, Lawrence ML, Bridges SM, Burgess SC.

Methods Mol Biol. 2010;604:137-44. doi: 10.1007/978-1-60761-444-9_10.

PMID:
20013369
7.

C. elegans ORFeome version 3.1: increasing the coverage of ORFeome resources with improved gene predictions.

Lamesch P, Milstein S, Hao T, Rosenberg J, Li N, Sequerra R, Bosak S, Doucette-Stamm L, Vandenhaute J, Hill DE, Vidal M.

Genome Res. 2004 Oct;14(10B):2064-9.

8.

A proteogenomic analysis of Shigella flexneri using 2D LC-MALDI TOF/TOF.

Zhao L, Liu L, Leng W, Wei C, Jin Q.

BMC Genomics. 2011 Oct 28;12:528. doi: 10.1186/1471-2164-12-528.

9.

A genome annotation-driven approach to cloning the human ORFeome.

Collins JE, Wright CL, Edwards CA, Davis MP, Grinham JA, Cole CG, Goward ME, Aguado B, Mallya M, Mokrab Y, Huckle EJ, Beare DM, Dunham I.

Genome Biol. 2004;5(10):R84. Epub 2004 Sep 30.

10.

tsORFdb: theoretical small open reading frames (ORFs) database and massProphet: peptide mass fingerprinting (PMF) tool for unknown small functional ORFs.

Heo HS, Lee S, Kim JM, Choi YJ, Chung HY, Oh SJ.

Biochem Biophys Res Commun. 2010 Jun 18;397(1):120-6. doi: 10.1016/j.bbrc.2010.05.093. Epub 2010 May 23.

PMID:
20501322
11.

Direct detection of alternative open reading frames translation products in human significantly expands the proteome.

Vanderperre B, Lucier JF, Bissonnette C, Motard J, Tremblay G, Vanderperre S, Wisztorski M, Salzet M, Boisvert FM, Roucou X.

PLoS One. 2013 Aug 12;8(8):e70698. doi: 10.1371/journal.pone.0070698. eCollection 2013.

13.

C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.

Reboul J, Vaglio P, Rual JF, Lamesch P, Martinez M, Armstrong CM, Li S, Jacotot L, Bertin N, Janky R, Moore T, Hudson JR Jr, Hartley JL, Brasch MA, Vandenhaute J, Boulton S, Endress GA, Jenna S, Chevet E, Papasotiropoulos V, Tolias PP, Ptacek J, Snyder M, Huang R, Chance MR, Lee H, Doucette-Stamm L, Hill DE, Vidal M.

Nat Genet. 2003 May;34(1):35-41.

PMID:
12679813
14.

Analysis of the Saccharomyces cerevisiae proteome with PeptideAtlas.

King NL, Deutsch EW, Ranish JA, Nesvizhskii AI, Eddes JS, Mallick P, Eng J, Desiere F, Flory M, Martin DB, Kim B, Lee H, Raught B, Aebersold R.

Genome Biol. 2006;7(11):R106.

15.

Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.

Fermin D, Allen BB, Blackwell TW, Menon R, Adamski M, Xu Y, Ulintz P, Omenn GS, States DJ.

Genome Biol. 2006;7(4):R35. Epub 2006 Apr 28.

16.

Phenotype-Genotype Integrator (PheGenI): synthesizing genome-wide association study (GWAS) data with existing genomic resources.

Ramos EM, Hoffman D, Junkins HA, Maglott D, Phan L, Sherry ST, Feolo M, Hindorff LA.

Eur J Hum Genet. 2014 Jan;22(1):144-7. doi: 10.1038/ejhg.2013.96. Epub 2013 May 22.

17.

BAGEL: a web-based bacteriocin genome mining tool.

de Jong A, van Hijum SA, Bijlsma JJ, Kok J, Kuipers OP.

Nucleic Acids Res. 2006 Jul 1;34(Web Server issue):W273-9.

18.

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches.

Yang X, Tschaplinski TJ, Hurst GB, Jawdy S, Abraham PE, Lankford PK, Adams RM, Shah MB, Hettich RL, Lindquist E, Kalluri UC, Gunter LE, Pennacchio C, Tuskan GA.

Genome Res. 2011 Apr;21(4):634-41. doi: 10.1101/gr.109280.110. Epub 2011 Mar 2.

20.

GWAS Integrator: a bioinformatics tool to explore human genetic associations reported in published genome-wide association studies.

Yu W, Yesupriya A, Wulf A, Hindorff LA, Dowling N, Khoury MJ, Gwinn M.

Eur J Hum Genet. 2011 Oct;19(10):1095-9. doi: 10.1038/ejhg.2011.91. Epub 2011 May 25.

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