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Items: 1 to 20 of 101

1.

Fast, accurate reconstruction of cell lineages from large-scale fluorescence microscopy data.

Amat F, Lemon W, Mossing DP, McDole K, Wan Y, Branson K, Myers EW, Keller PJ.

Nat Methods. 2014 Sep;11(9):951-8. doi: 10.1038/nmeth.3036. Epub 2014 Jul 20.

PMID:
25042785
2.

Real-Time Three-Dimensional Cell Segmentation in Large-Scale Microscopy Data of Developing Embryos.

Stegmaier J, Amat F, Lemon WC, McDole K, Wan Y, Teodoro G, Mikut R, Keller PJ.

Dev Cell. 2016 Jan 25;36(2):225-40. doi: 10.1016/j.devcel.2015.12.028.

3.

Methodology for reconstructing early zebrafish development from in vivo multiphoton microscopy.

Luengo-Oroz MA, Rubio-Guivernau JL, Faure E, Savy T, Duloquin L, Olivier N, Pastor D, Ledesma-Carbayo M, Débarre D, Bourgine P, Beaurepaire E, Peyriéras N, Santos A.

IEEE Trans Image Process. 2012 Apr;21(4):2335-40. doi: 10.1109/TIP.2011.2177911. Epub 2011 Dec 1.

PMID:
22155959
4.

Towards comprehensive cell lineage reconstructions in complex organisms using light-sheet microscopy.

Amat F, Keller PJ.

Dev Growth Differ. 2013 May;55(4):563-78. doi: 10.1111/dgd.12063. Epub 2013 Apr 29. Review.

PMID:
23621671
5.

Efficient globally optimal segmentation of cells in fluorescence microscopy images using level sets and convex energy functionals.

Bergeest JP, Rohr K.

Med Image Anal. 2012 Oct;16(7):1436-44. doi: 10.1016/j.media.2012.05.012. Epub 2012 Jun 21.

PMID:
22795525
6.

Visualization and correction of automated segmentation, tracking and lineaging from 5-D stem cell image sequences.

Wait E, Winter M, Bjornsson C, Kokovay E, Wang Y, Goderie S, Temple S, Cohen AR.

BMC Bioinformatics. 2014 Oct 3;15:328. doi: 10.1186/1471-2105-15-328.

7.

Cells tracking in a live zebrafish embryo.

Melani C, Campana M, Lombardot B, Rizzi B, Veronesi F, Zanella C, Bourgine P, Mikula K, Peyriéras N, Sarti A.

Conf Proc IEEE Eng Med Biol Soc. 2007;2007:1631-4.

PMID:
18002285
8.

Reconstructing embryonic development.

Khairy K, Keller PJ.

Genesis. 2011 Jul;49(7):488-513. doi: 10.1002/dvg.20698. Epub 2011 Jan 24. Review.

PMID:
21140407
9.

High-resolution reconstruction of the beating zebrafish heart.

Mickoleit M, Schmid B, Weber M, Fahrbach FO, Hombach S, Reischauer S, Huisken J.

Nat Methods. 2014 Sep;11(9):919-22. doi: 10.1038/nmeth.3037. Epub 2014 Jul 20.

PMID:
25042787
10.

Quantitative high-speed imaging of entire developing embryos with simultaneous multiview light-sheet microscopy.

Tomer R, Khairy K, Amat F, Keller PJ.

Nat Methods. 2012 Jun 3;9(7):755-63. doi: 10.1038/nmeth.2062.

PMID:
22660741
11.

2D mapping of strongly deformed cell nuclei based on contour warping.

De Vylder J, Douterloigne K, De Vos W, Philips W.

Conf Proc IEEE Eng Med Biol Soc. 2010;2010:4379-82. doi: 10.1109/IEMBS.2010.5627099.

PMID:
21096456
12.

Empirical gradient threshold technique for automated segmentation across image modalities and cell lines.

Chalfoun J, Majurski M, Peskin A, Breen C, Bajcsy P, Brady M.

J Microsc. 2015 Oct;260(1):86-99. doi: 10.1111/jmi.12269. Epub 2015 Jun 5.

PMID:
26046924
13.

Cell tracking in fluorescence images of embryogenesis processes with morphological reconstruction by 4D-tubular structuring elements.

Pastor D, Luengo-Oroz MA, Lombardot B, Gonzalvez I, Duloquin L, Savy T, Bourgine P, Peyrieras N, Santos A.

Conf Proc IEEE Eng Med Biol Soc. 2009;2009:970-3. doi: 10.1109/IEMBS.2009.5333756.

PMID:
19964254
14.

Automated mitosis detection of stem cell populations in phase-contrast microscopy images.

Huh S, Ker DF, Bise R, Chen M, Kanade T.

IEEE Trans Med Imaging. 2011 Mar;30(3):586-96. doi: 10.1109/TMI.2010.2089384.

PMID:
21356609
15.

Light sheet microscopy in cell biology.

Tomer R, Khairy K, Keller PJ.

Methods Mol Biol. 2013;931:123-37. doi: 10.1007/978-1-62703-056-4_7. Review.

PMID:
23027001
16.

Extracting fluorescent reporter time courses of cell lineages from high-throughput microscopy at low temporal resolution.

Downey MJ, Jeziorska DM, Ott S, Tamai TK, Koentges G, Vance KW, Bretschneider T.

PLoS One. 2011;6(12):e27886. doi: 10.1371/journal.pone.0027886. Epub 2011 Dec 15.

17.

Light sheet-based imaging and analysis of early embryogenesis in the fruit fly.

Khairy K, Lemon WC, Amat F, Keller PJ.

Methods Mol Biol. 2015;1189:79-97. doi: 10.1007/978-1-4939-1164-6_6.

PMID:
25245688
18.

A semi-Markov model for mitosis segmentation in time-lapse phase contrast microscopy image sequences of stem cell populations.

Liu AA, Li K, Kanade T.

IEEE Trans Med Imaging. 2012 Feb;31(2):359-69. doi: 10.1109/TMI.2011.2169495. Epub 2011 Sep 26.

PMID:
21954199
19.

Spatio-temporal cell cycle phase analysis using level sets and fast marching methods.

Padfield D, Rittscher J, Thomas N, Roysam B.

Med Image Anal. 2009 Feb;13(1):143-55. doi: 10.1016/j.media.2008.06.018. Epub 2008 Jul 23.

PMID:
18752984
20.

Fast image reconstruction in fluorescence optical tomography using data compression.

Rudge TJ, Soloviev VY, Arridge SR.

Opt Lett. 2010 Mar 1;35(5):763-5. doi: 10.1364/OL.35.000763.

PMID:
20195345

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